4 "cell_type": "markdown",
7 "# Interleaved strings\n",
9 "Given two strings a and b and a target c, could c be formed form some interleaving/merge of a and b?\n",
16 "When s3 = \"aadbbcbcac\", return true.\n",
17 "When s3 = \"aadbbbaccc\", return false."
43 "s3t = \"aadbbcbcac\"\n",
44 "s3f = \"aadbbbaccc\""
57 "[(0, ''), (1, 'a'), (2, 'aa'), (3, 'aab'), (4, 'aabc'), (5, 'aabcc')]"
62 "output_type": "execute_result"
66 "[(i, s1[:i]) for i in range(len(s1)+1)]"
70 "cell_type": "markdown",
73 "`dp_table[i, j]` is True if first `i` + `j` characters of `s3` can be formed from interleaving of first `i` characters of `s1` and first `j` characters of `s2`."
86 "[[True, False, False, False, False, False],\n",
87 " [False, False, False, False, False, False],\n",
88 " [False, False, False, False, False, False],\n",
89 " [False, False, False, False, False, False],\n",
90 " [False, False, False, False, False, False],\n",
91 " [False, False, False, False, False, False]]"
96 "output_type": "execute_result"
100 "dp_table = [[False] * (len(s1) + 1) for _ in range(len(s2) + 1)]\n",
101 "dp_table[0][0] = True\n",
107 "execution_count": 5,
154 "execution_count": 5,
156 "output_type": "execute_result"
160 "dp_table = {(i, j): False\n",
161 " for i in range(len(s1)+1)\n",
162 " for j in range(len(s2)+1)}\n",
168 "execution_count": 6,
174 "def show_table(table):\n",
175 " return '\\n'.join(\n",
176 " ' '.join(str(table[i, j])[0] for j in sorted(set([k[1] for k in table])))\n",
177 " for i in sorted(set([k[0] for k in table]))) "
182 "execution_count": 7,
188 "def show_table(table):\n",
189 " return '\\n'.join(\n",
190 " ' '.join('T' if table[i, j] else '.' for j in sorted(set([k[1] for k in table])))\n",
191 " for i in sorted(set([k[0] for k in table]))) "
196 "execution_count": 8,
203 "output_type": "stream",
215 "print(show_table(dp_table))"
220 "execution_count": 9,
227 "output_type": "stream",
229 "aabcc dbbca aadbbbaccc\n",
230 "aa 0 0 ! ! ! True\n",
231 "s2 0 1 ! d a False\n",
232 "s2 0 2 ! b a False\n",
233 "s2 0 3 ! b d False\n",
234 "s2 0 4 ! c b False\n",
235 "s2 0 5 ! a b False\n",
236 "s1 1 0 a ! a True\n",
237 "xx 1 1 a d a False\n",
238 "xx 1 2 a b d False\n",
239 "xx 1 3 a b b False\n",
240 "xx 1 4 a c b False\n",
241 "xx 1 5 a a b False\n",
242 "s1 2 0 a ! a True\n",
243 "s2 2 1 a d d True\n",
244 "s2 2 2 a b b True\n",
245 "s2 2 3 a b b True\n",
246 "xx 2 4 a c b False\n",
247 "xx 2 5 a a a False\n",
248 "s1 3 0 b ! d False\n",
249 "s1 3 1 b d b True\n",
250 "s2 3 2 b b b True\n",
251 "s1 3 2 b b b True\n",
252 "s2 3 3 b b b True\n",
253 "s1 3 3 b b b True\n",
254 "xx 3 4 b c a False\n",
255 "xx 3 5 b a c False\n",
256 "s1 4 0 c ! b False\n",
257 "xx 4 1 c d b False\n",
258 "xx 4 2 c b b False\n",
259 "xx 4 3 c b a False\n",
260 "xx 4 4 c c c False\n",
261 "xx 4 5 c a c False\n",
262 "s1 5 0 c ! b False\n",
263 "xx 5 1 c d b False\n",
264 "xx 5 2 c b a False\n",
265 "xx 5 3 c b c False\n",
266 "xx 5 4 c c c False\n",
267 "xx 5 5 c a c False\n",
279 "{(1, 0): (0, 0, 'a', 's1'),\n",
280 " (2, 0): (1, 0, 'a', 's1'),\n",
281 " (2, 1): (2, 0, 'd', 's2'),\n",
282 " (2, 2): (2, 1, 'b', 's2'),\n",
283 " (2, 3): (2, 2, 'b', 's2'),\n",
284 " (3, 1): (2, 1, 'b', 's1'),\n",
285 " (3, 2): (2, 2, 'b', 's1'),\n",
286 " (3, 3): (2, 3, 'b', 's1')}"
289 "execution_count": 9,
291 "output_type": "execute_result"
297 "print(s1, s2, s3)\n",
299 "dp_table = {(i, j): False\n",
300 " for i in range(len(s1)+1)\n",
301 " for j in range(len(s2)+1)}\n",
303 "backpointers = {}\n",
305 "for i in range(len(s1)+1):\n",
306 " for j in range(len(s2)+1):\n",
307 " if i == 0 and j == 0:\n",
308 " dp_table[i, j] = True\n",
309 " print('aa', i, j, '!', '!', '!', dp_table[i, j])\n",
311 " # extend by character from s2\n",
312 " if dp_table[i, j-1] and s2[j-1] == s3[i+j-1]:\n",
313 " dp_table[i, j] = True\n",
314 " backpointers[i, j] = (i, j-1, s2[j-1], 's2')\n",
315 " print('s2', i, j, '!', s2[j-1], s3[i+j-1], dp_table[i, j])\n",
317 " # extend by character from s1\n",
318 " if dp_table[i-1, j] and s1[i-1] == s3[i+j-1]:\n",
319 " dp_table[i, j] = True\n",
320 " backpointers[i, j] = (i-1, j, s1[i-1], 's1')\n",
321 " print('s1', i, j, s1[i-1], '!', s3[i+j-1], dp_table[i, j])\n",
323 " # extend by character from s2\n",
324 " if dp_table[i, j-1] and s2[j-1] == s3[i+j-1]:\n",
325 " dp_table[i, j] = True\n",
326 " backpointers[i, j] = (i, j-1, s2[j-1], 's2')\n",
327 " print('s2', i, j, s1[i-1], s2[j-1], s3[i+j-1], dp_table[i, j]) \n",
328 " # extend by character from s1\n",
329 " if dp_table[i-1, j] and s1[i-1] == s3[i+j-1]:\n",
330 " dp_table[i, j] = True\n",
331 " backpointers[i, j] = (i-1, j, s1[i-1], 's1') \n",
332 " print('s1', i, j, s1[i-1], s2[j-1], s3[i+j-1], dp_table[i, j])\n",
333 " if not dp_table[i, j]:\n",
334 " print('xx', i, j, s1[i-1], s2[j-1], s3[i+j-1], dp_table[i, j])\n",
336 "print(show_table(dp_table))\n",
342 "execution_count": 10,
348 "def is_interleave(seq1, seq2, seq3, return_backpointers=False, return_table=False, debug=False):\n",
349 " \"\"\"Return true if seq3 is some interleaved merge of seq1 and seq2.\n",
350 " If return_backpointers, also return the set of backpointers to\n",
351 " reconstruct the interleaving\"\"\"\n",
353 " # dp_table[i, j] is True if first i+j characters of seq is made up of \n",
354 " # an interleaving of the first i characters of seq1 and the \n",
355 " # first j characters of seq2\n",
357 " if len(seq1) + len(seq2) != len(seq3):\n",
358 " if return_backpointers or return_table:\n",
359 " retval = [False]\n",
360 " if return_backpointers:\n",
362 " if return_table:\n",
364 " return tuple(retval)\n",
368 " dp_table = {(i, j): False\n",
369 " for i in range(len(seq1)+1)\n",
370 " for j in range(len(seq2)+1)}\n",
372 " backpointers = {}\n",
374 " for i in range(len(seq1)+1):\n",
375 " for j in range(len(seq2)+1):\n",
376 " if i == 0 and j == 0:\n",
377 " dp_table[i, j] = True\n",
378 " if debug: print('xxxx', i, j, '!', '!', '!', dp_table[i, j])\n",
380 " # extend by character from seq2\n",
381 " if dp_table[i, j-1] and seq2[j-1] == seq3[i+j-1]:\n",
382 " dp_table[i, j] = True\n",
383 " backpointers[i, j] = (i, j-1, seq2[j-1], 'seq2')\n",
384 " if debug: print('seq2', i, j, '!', seq2[j-1], seq3[i+j-1], dp_table[i, j])\n",
386 " # extend by character from seq1\n",
387 " if dp_table[i-1, j] and seq1[i-1] == seq3[i+j-1]:\n",
388 " dp_table[i, j] = True\n",
389 " backpointers[i, j] = (i-1, j, seq1[i-1], 'seq1')\n",
390 " if debug: print('seq1', i, j, seq1[i-1], '!', seq3[i+j-1], dp_table[i, j])\n",
392 " # extend by character from seq2\n",
393 " if dp_table[i, j-1] and seq2[j-1] == seq3[i+j-1]:\n",
394 " dp_table[i, j] = True\n",
395 " backpointers[i, j] = (i, j-1, seq2[j-1], 'seq2')\n",
396 " if debug: print('seq2', i, j, seq1[i-1], seq2[j-1], seq3[i+j-1], dp_table[i, j]) \n",
397 " # extend by character from seq1\n",
398 " if dp_table[i-1, j] and seq1[i-1] == seq3[i+j-1]:\n",
399 " dp_table[i, j] = True\n",
400 " backpointers[i, j] = (i-1, j, seq1[i-1], 'seq1') \n",
401 " if debug: print('seq1', i, j, seq1[i-1], seq2[j-1], seq3[i+j-1], dp_table[i, j])\n",
402 " if not dp_table[i, j]:\n",
403 " if debug: print('xxxx', i, j, seq1[i-1], seq2[j-1], seq3[i+j-1], dp_table[i, j])\n",
405 " if return_backpointers or return_table:\n",
406 " retval = [dp_table[len(seq1), len(seq2)]]\n",
407 " if return_backpointers:\n",
408 " retval += [backpointers]\n",
409 " if return_table:\n",
410 " retval += [dp_table]\n",
411 " return tuple(retval)\n",
413 " return dp_table[len(seq1), len(seq2)]"
418 "execution_count": 11,
429 "execution_count": 11,
431 "output_type": "execute_result"
435 "is_interleave(s1, s2, s3t)"
440 "execution_count": 12,
449 " {(1, 0): (0, 0, 'a', 'seq1'),\n",
450 " (2, 0): (1, 0, 'a', 'seq1'),\n",
451 " (2, 1): (2, 0, 'd', 'seq2'),\n",
452 " (2, 2): (2, 1, 'b', 'seq2'),\n",
453 " (2, 3): (2, 2, 'b', 'seq2'),\n",
454 " (2, 4): (2, 3, 'c', 'seq2'),\n",
455 " (3, 1): (2, 1, 'b', 'seq1'),\n",
456 " (3, 2): (2, 2, 'b', 'seq1'),\n",
457 " (3, 4): (2, 4, 'b', 'seq1'),\n",
458 " (4, 2): (3, 2, 'c', 'seq1'),\n",
459 " (4, 3): (4, 2, 'b', 'seq2'),\n",
460 " (4, 4): (3, 4, 'c', 'seq1'),\n",
461 " (4, 5): (4, 4, 'a', 'seq2'),\n",
462 " (5, 3): (4, 3, 'c', 'seq1'),\n",
463 " (5, 5): (4, 5, 'c', 'seq1')})"
466 "execution_count": 12,
468 "output_type": "execute_result"
472 "is_interleave(s1, s2, s3t, return_backpointers=True)"
477 "execution_count": 13,
487 " {(1, 0): (0, 0, 'a', 'seq1'),\n",
488 " (2, 0): (1, 0, 'a', 'seq1'),\n",
489 " (2, 1): (2, 0, 'd', 'seq2'),\n",
490 " (2, 2): (2, 1, 'b', 'seq2'),\n",
491 " (2, 3): (2, 2, 'b', 'seq2'),\n",
492 " (2, 4): (2, 3, 'c', 'seq2'),\n",
493 " (3, 1): (2, 1, 'b', 'seq1'),\n",
494 " (3, 2): (2, 2, 'b', 'seq1'),\n",
495 " (3, 4): (2, 4, 'b', 'seq1'),\n",
496 " (4, 2): (3, 2, 'c', 'seq1'),\n",
497 " (4, 3): (4, 2, 'b', 'seq2'),\n",
498 " (4, 4): (3, 4, 'c', 'seq1'),\n",
499 " (4, 5): (4, 4, 'a', 'seq2'),\n",
500 " (5, 3): (4, 3, 'c', 'seq1'),\n",
501 " (5, 5): (4, 5, 'c', 'seq1')},\n",
540 "execution_count": 13,
542 "output_type": "execute_result"
546 "is_interleave(s1, s2, s3t, return_backpointers=True, return_table=True)"
551 "execution_count": 14,
562 "execution_count": 14,
564 "output_type": "execute_result"
568 "is_interleave(s1, s2, s3f)"
573 "execution_count": 15,
580 "output_type": "stream",
582 "xxxx 0 0 ! ! ! True\n",
583 "seq2 0 1 ! b a False\n",
584 "seq2 0 2 ! b a False\n",
585 "seq2 0 3 ! b a False\n",
586 "seq1 1 0 a ! a True\n",
587 "xxxx 1 1 a b a False\n",
588 "xxxx 1 2 a b a False\n",
589 "xxxx 1 3 a b b False\n",
590 "seq1 2 0 a ! a True\n",
591 "xxxx 2 1 a b a False\n",
592 "xxxx 2 2 a b b False\n",
593 "xxxx 2 3 a b a False\n",
594 "seq1 3 0 a ! a True\n",
595 "seq2 3 1 a b b True\n",
596 "xxxx 3 2 a b a False\n",
597 "xxxx 3 3 a b b False\n",
598 "seq1 4 0 a ! b False\n",
599 "seq1 4 1 a b a True\n",
600 "seq2 4 2 a b b True\n",
601 "seq2 4 3 a b b True\n"
608 " {(1, 0): (0, 0, 'a', 'seq1'),\n",
609 " (2, 0): (1, 0, 'a', 'seq1'),\n",
610 " (3, 0): (2, 0, 'a', 'seq1'),\n",
611 " (3, 1): (3, 0, 'b', 'seq2'),\n",
612 " (4, 1): (3, 1, 'a', 'seq1'),\n",
613 " (4, 2): (4, 1, 'b', 'seq2'),\n",
614 " (4, 3): (4, 2, 'b', 'seq2')})"
617 "execution_count": 15,
619 "output_type": "execute_result"
623 "is_interleave('aaaa', 'bbb', 'aaababb', return_backpointers=True, debug=True)"
628 "execution_count": 16,
634 "def show_backtrace(bps):\n",
635 " i = max([0] + [k[0] for k in bps])\n",
636 " j = max([0] + [k[1] for k in bps])\n",
638 " if (i, j) in bps:\n",
639 " while i != 0 or j != 0:\n",
640 " if bps[i, j][3] == 'seq1':\n",
641 " chars += bps[i, j][2].upper()\n",
643 " chars += bps[i, j][2]\n",
644 " i, j = bps[i, j][0], bps[i, j][1] \n",
645 " return ''.join(list(reversed(chars)))\n",
652 "execution_count": 17,
658 "def make_string(length, alphabet=None):\n",
659 " if not alphabet:\n",
660 " alphabet = 'abcdefgh'\n",
661 " return ''.join(random.choice(alphabet) for _ in range(length)) "
666 "execution_count": 18,
674 "'acdcfgfcgdhagedbdccbgefgbfbgaacbfbdcebehaeccgadghe'"
677 "execution_count": 18,
679 "output_type": "execute_result"
688 "execution_count": 19,
694 "def interleave(s1, s2, wander_limit=10, debug=False):\n",
695 " i1 = i2 = wander = 0\n",
696 " interleaved = []\n",
697 " while i1 <= len(s1) and i2 <= len(s2):\n",
698 " if i1 == len(s1):\n",
699 " if debug: print(i1, i2, wander, 'remaining s2', s2[i2:])\n",
700 " interleaved += s2[i2:]\n",
701 " i2 = len(s2) + 1\n",
702 " elif i2 == len(s2):\n",
703 " if debug: print(i1, i2, wander, 'remaining s1', s1[i1:])\n",
704 " interleaved += s1[i1:]\n",
705 " i1 = len(s1) + 1\n",
707 " if wander == wander_limit:\n",
709 " elif wander == -wander_limit:\n",
712 " step = random.choice([+1, -1])\n",
714 " if debug: print(i1, i2, wander, 'adding', s1[i1])\n",
715 " interleaved += s1[i1]\n",
719 " if debug: print(i1, i2, wander, 'adding', s2[i2])\n",
720 " interleaved += s2[i2]\n",
723 " return ''.join(interleaved)\n",
729 "execution_count": 20,
736 "output_type": "stream",
753 "5 10 -5 adding g\n",
754 "6 10 -4 adding u\n",
755 "6 11 -5 adding g\n",
756 "7 11 -4 adding g\n",
757 "8 11 -3 adding f\n",
758 "9 11 -2 adding g\n",
759 "10 11 -1 adding g\n",
760 "11 11 0 adding w\n",
761 "11 12 -1 adding y\n",
762 "11 13 -2 adding w\n",
763 "11 14 -3 adding y\n",
764 "11 15 -4 adding a\n",
765 "12 15 -3 adding e\n",
766 "13 15 -2 adding z\n",
767 "13 16 -3 adding x\n",
768 "13 17 -4 adding x\n",
769 "13 18 -5 adding f\n",
770 "14 18 -4 adding y\n",
771 "14 19 -5 adding b\n",
772 "15 19 -4 adding x\n",
773 "15 20 -5 remaining s1 fcbab\n"
779 "('gfhabgggfggaefbfcbab',\n",
780 " 'wxuzzxuyuwuwywyzxxyx',\n",
781 " 'gwxuzfzxhuabyuwguggfggwywyaezxxfybxfcbab',\n",
785 "execution_count": 20,
787 "output_type": "execute_result"
791 "s1 = make_string(20)\n",
792 "s2 = make_string(20, alphabet='uvwxyz')\n",
793 "il = interleave(s1, s2, wander_limit=5, debug=True)\n",
794 "s1, s2, il, len(il)"
799 "execution_count": 21,
806 "output_type": "stream",
808 "xxxx 0 0 ! ! ! True\n",
809 "seq2 0 1 ! g g True\n",
810 "seq2 0 2 ! f w False\n",
811 "seq2 0 3 ! h x False\n",
812 "seq2 0 4 ! a u False\n",
813 "seq2 0 5 ! b z False\n",
814 "seq2 0 6 ! g f False\n",
815 "seq2 0 7 ! g z False\n",
816 "seq2 0 8 ! g x False\n",
817 "seq2 0 9 ! f h False\n",
818 "seq2 0 10 ! g u False\n",
819 "seq2 0 11 ! g a False\n",
820 "seq2 0 12 ! a b False\n",
821 "seq2 0 13 ! e y False\n",
822 "seq2 0 14 ! f u False\n",
823 "seq2 0 15 ! b w False\n",
824 "seq2 0 16 ! f g False\n",
825 "seq2 0 17 ! c u False\n",
826 "seq2 0 18 ! b g False\n",
827 "seq2 0 19 ! a g False\n",
828 "seq2 0 20 ! b f False\n",
829 "seq1 1 0 w ! g False\n",
830 "seq1 1 1 w g w True\n",
831 "xxxx 1 2 w f x False\n",
832 "xxxx 1 3 w h u False\n",
833 "xxxx 1 4 w a z False\n",
834 "xxxx 1 5 w b f False\n",
835 "xxxx 1 6 w g z False\n",
836 "xxxx 1 7 w g x False\n",
837 "xxxx 1 8 w g h False\n",
838 "xxxx 1 9 w f u False\n",
839 "xxxx 1 10 w g a False\n",
840 "xxxx 1 11 w g b False\n",
841 "xxxx 1 12 w a y False\n",
842 "xxxx 1 13 w e u False\n",
843 "xxxx 1 14 w f w False\n",
844 "xxxx 1 15 w b g False\n",
845 "xxxx 1 16 w f u False\n",
846 "xxxx 1 17 w c g False\n",
847 "xxxx 1 18 w b g False\n",
848 "xxxx 1 19 w a f False\n",
849 "xxxx 1 20 w b g False\n",
850 "seq1 2 0 x ! w False\n",
851 "seq1 2 1 x g x True\n",
852 "xxxx 2 2 x f u False\n",
853 "xxxx 2 3 x h z False\n",
854 "xxxx 2 4 x a f False\n",
855 "xxxx 2 5 x b z False\n",
856 "xxxx 2 6 x g x False\n",
857 "xxxx 2 7 x g h False\n",
858 "xxxx 2 8 x g u False\n",
859 "xxxx 2 9 x f a False\n",
860 "xxxx 2 10 x g b False\n",
861 "xxxx 2 11 x g y False\n",
862 "xxxx 2 12 x a u False\n",
863 "xxxx 2 13 x e w False\n",
864 "xxxx 2 14 x f g False\n",
865 "xxxx 2 15 x b u False\n",
866 "xxxx 2 16 x f g False\n",
867 "xxxx 2 17 x c g False\n",
868 "xxxx 2 18 x b f False\n",
869 "xxxx 2 19 x a g False\n",
870 "xxxx 2 20 x b g False\n",
871 "seq1 3 0 u ! x False\n",
872 "seq1 3 1 u g u True\n",
873 "xxxx 3 2 u f z False\n",
874 "xxxx 3 3 u h f False\n",
875 "xxxx 3 4 u a z False\n",
876 "xxxx 3 5 u b x False\n",
877 "xxxx 3 6 u g h False\n",
878 "xxxx 3 7 u g u False\n",
879 "xxxx 3 8 u g a False\n",
880 "xxxx 3 9 u f b False\n",
881 "xxxx 3 10 u g y False\n",
882 "xxxx 3 11 u g u False\n",
883 "xxxx 3 12 u a w False\n",
884 "xxxx 3 13 u e g False\n",
885 "xxxx 3 14 u f u False\n",
886 "xxxx 3 15 u b g False\n",
887 "xxxx 3 16 u f g False\n",
888 "xxxx 3 17 u c f False\n",
889 "xxxx 3 18 u b g False\n",
890 "xxxx 3 19 u a g False\n",
891 "xxxx 3 20 u b w False\n",
892 "seq1 4 0 z ! u False\n",
893 "seq1 4 1 z g z True\n",
894 "seq2 4 2 z f f True\n",
895 "xxxx 4 3 z h z False\n",
896 "xxxx 4 4 z a x False\n",
897 "xxxx 4 5 z b h False\n",
898 "xxxx 4 6 z g u False\n",
899 "xxxx 4 7 z g a False\n",
900 "xxxx 4 8 z g b False\n",
901 "xxxx 4 9 z f y False\n",
902 "xxxx 4 10 z g u False\n",
903 "xxxx 4 11 z g w False\n",
904 "xxxx 4 12 z a g False\n",
905 "xxxx 4 13 z e u False\n",
906 "xxxx 4 14 z f g False\n",
907 "xxxx 4 15 z b g False\n",
908 "xxxx 4 16 z f f False\n",
909 "xxxx 4 17 z c g False\n",
910 "xxxx 4 18 z b g False\n",
911 "xxxx 4 19 z a w False\n",
912 "xxxx 4 20 z b y False\n",
913 "seq1 5 0 z ! z False\n",
914 "xxxx 5 1 z g f False\n",
915 "seq1 5 2 z f z True\n",
916 "xxxx 5 3 z h x False\n",
917 "xxxx 5 4 z a h False\n",
918 "xxxx 5 5 z b u False\n",
919 "xxxx 5 6 z g a False\n",
920 "xxxx 5 7 z g b False\n",
921 "xxxx 5 8 z g y False\n",
922 "xxxx 5 9 z f u False\n",
923 "xxxx 5 10 z g w False\n",
924 "xxxx 5 11 z g g False\n",
925 "xxxx 5 12 z a u False\n",
926 "xxxx 5 13 z e g False\n",
927 "xxxx 5 14 z f g False\n",
928 "xxxx 5 15 z b f False\n",
929 "xxxx 5 16 z f g False\n",
930 "xxxx 5 17 z c g False\n",
931 "xxxx 5 18 z b w False\n",
932 "xxxx 5 19 z a y False\n",
933 "xxxx 5 20 z b w False\n",
934 "seq1 6 0 x ! f False\n",
935 "xxxx 6 1 x g z False\n",
936 "seq1 6 2 x f x True\n",
937 "seq2 6 3 x h h True\n",
938 "xxxx 6 4 x a u False\n",
939 "xxxx 6 5 x b a False\n",
940 "xxxx 6 6 x g b False\n",
941 "xxxx 6 7 x g y False\n",
942 "xxxx 6 8 x g u False\n",
943 "xxxx 6 9 x f w False\n",
944 "xxxx 6 10 x g g False\n",
945 "xxxx 6 11 x g u False\n",
946 "xxxx 6 12 x a g False\n",
947 "xxxx 6 13 x e g False\n",
948 "xxxx 6 14 x f f False\n",
949 "xxxx 6 15 x b g False\n",
950 "xxxx 6 16 x f g False\n",
951 "xxxx 6 17 x c w False\n",
952 "xxxx 6 18 x b y False\n",
953 "xxxx 6 19 x a w False\n",
954 "xxxx 6 20 x b y False\n",
955 "seq1 7 0 u ! z False\n",
956 "xxxx 7 1 u g x False\n",
957 "xxxx 7 2 u f h False\n",
958 "seq1 7 3 u h u True\n",
959 "seq2 7 4 u a a True\n",
960 "seq2 7 5 u b b True\n",
961 "xxxx 7 6 u g y False\n",
962 "xxxx 7 7 u g u False\n",
963 "xxxx 7 8 u g w False\n",
964 "xxxx 7 9 u f g False\n",
965 "xxxx 7 10 u g u False\n",
966 "xxxx 7 11 u g g False\n",
967 "xxxx 7 12 u a g False\n",
968 "xxxx 7 13 u e f False\n",
969 "xxxx 7 14 u f g False\n",
970 "xxxx 7 15 u b g False\n",
971 "xxxx 7 16 u f w False\n",
972 "xxxx 7 17 u c y False\n",
973 "xxxx 7 18 u b w False\n",
974 "xxxx 7 19 u a y False\n",
975 "xxxx 7 20 u b a False\n",
976 "seq1 8 0 y ! x False\n",
977 "xxxx 8 1 y g h False\n",
978 "xxxx 8 2 y f u False\n",
979 "xxxx 8 3 y h a False\n",
980 "xxxx 8 4 y a b False\n",
981 "seq1 8 5 y b y True\n",
982 "xxxx 8 6 y g u False\n",
983 "xxxx 8 7 y g w False\n",
984 "xxxx 8 8 y g g False\n",
985 "xxxx 8 9 y f u False\n",
986 "xxxx 8 10 y g g False\n",
987 "xxxx 8 11 y g g False\n",
988 "xxxx 8 12 y a f False\n",
989 "xxxx 8 13 y e g False\n",
990 "xxxx 8 14 y f g False\n",
991 "xxxx 8 15 y b w False\n",
992 "xxxx 8 16 y f y False\n",
993 "xxxx 8 17 y c w False\n",
994 "xxxx 8 18 y b y False\n",
995 "xxxx 8 19 y a a False\n",
996 "xxxx 8 20 y b e False\n",
997 "seq1 9 0 u ! h False\n",
998 "xxxx 9 1 u g u False\n",
999 "xxxx 9 2 u f a False\n",
1000 "xxxx 9 3 u h b False\n",
1001 "xxxx 9 4 u a y False\n",
1002 "seq1 9 5 u b u True\n",
1003 "xxxx 9 6 u g w False\n",
1004 "xxxx 9 7 u g g False\n",
1005 "xxxx 9 8 u g u False\n",
1006 "xxxx 9 9 u f g False\n",
1007 "xxxx 9 10 u g g False\n",
1008 "xxxx 9 11 u g f False\n",
1009 "xxxx 9 12 u a g False\n",
1010 "xxxx 9 13 u e g False\n",
1011 "xxxx 9 14 u f w False\n",
1012 "xxxx 9 15 u b y False\n",
1013 "xxxx 9 16 u f w False\n",
1014 "xxxx 9 17 u c y False\n",
1015 "xxxx 9 18 u b a False\n",
1016 "xxxx 9 19 u a e False\n",
1017 "xxxx 9 20 u b z False\n",
1018 "seq1 10 0 w ! u False\n",
1019 "xxxx 10 1 w g a False\n",
1020 "xxxx 10 2 w f b False\n",
1021 "xxxx 10 3 w h y False\n",
1022 "xxxx 10 4 w a u False\n",
1023 "seq1 10 5 w b w True\n",
1024 "seq2 10 6 w g g True\n",
1025 "xxxx 10 7 w g u False\n",
1026 "xxxx 10 8 w g g False\n",
1027 "xxxx 10 9 w f g False\n",
1028 "xxxx 10 10 w g f False\n",
1029 "xxxx 10 11 w g g False\n",
1030 "xxxx 10 12 w a g False\n",
1031 "xxxx 10 13 w e w False\n",
1032 "xxxx 10 14 w f y False\n",
1033 "xxxx 10 15 w b w False\n",
1034 "xxxx 10 16 w f y False\n",
1035 "xxxx 10 17 w c a False\n",
1036 "xxxx 10 18 w b e False\n",
1037 "xxxx 10 19 w a z False\n",
1038 "xxxx 10 20 w b x False\n",
1039 "seq1 11 0 u ! a False\n",
1040 "xxxx 11 1 u g b False\n",
1041 "xxxx 11 2 u f y False\n",
1042 "xxxx 11 3 u h u False\n",
1043 "xxxx 11 4 u a w False\n",
1044 "xxxx 11 5 u b g False\n",
1045 "seq1 11 6 u g u True\n",
1046 "seq2 11 7 u g g True\n",
1047 "seq2 11 8 u g g True\n",
1048 "seq2 11 9 u f f True\n",
1049 "seq2 11 10 u g g True\n",
1050 "seq2 11 11 u g g True\n",
1051 "xxxx 11 12 u a w False\n",
1052 "xxxx 11 13 u e y False\n",
1053 "xxxx 11 14 u f w False\n",
1054 "xxxx 11 15 u b y False\n",
1055 "xxxx 11 16 u f a False\n",
1056 "xxxx 11 17 u c e False\n",
1057 "xxxx 11 18 u b z False\n",
1058 "xxxx 11 19 u a x False\n",
1059 "xxxx 11 20 u b x False\n",
1060 "seq1 12 0 w ! b False\n",
1061 "xxxx 12 1 w g y False\n",
1062 "xxxx 12 2 w f u False\n",
1063 "xxxx 12 3 w h w False\n",
1064 "xxxx 12 4 w a g False\n",
1065 "xxxx 12 5 w b u False\n",
1066 "xxxx 12 6 w g g False\n",
1067 "xxxx 12 7 w g g False\n",
1068 "xxxx 12 8 w g f False\n",
1069 "xxxx 12 9 w f g False\n",
1070 "xxxx 12 10 w g g False\n",
1071 "seq1 12 11 w g w True\n",
1072 "xxxx 12 12 w a y False\n",
1073 "xxxx 12 13 w e w False\n",
1074 "xxxx 12 14 w f y False\n",
1075 "xxxx 12 15 w b a False\n",
1076 "xxxx 12 16 w f e False\n",
1077 "xxxx 12 17 w c z False\n",
1078 "xxxx 12 18 w b x False\n",
1079 "xxxx 12 19 w a x False\n",
1080 "xxxx 12 20 w b f False\n",
1081 "seq1 13 0 y ! y False\n",
1082 "xxxx 13 1 y g u False\n",
1083 "xxxx 13 2 y f w False\n",
1084 "xxxx 13 3 y h g False\n",
1085 "xxxx 13 4 y a u False\n",
1086 "xxxx 13 5 y b g False\n",
1087 "xxxx 13 6 y g g False\n",
1088 "xxxx 13 7 y g f False\n",
1089 "xxxx 13 8 y g g False\n",
1090 "xxxx 13 9 y f g False\n",
1091 "xxxx 13 10 y g w False\n",
1092 "seq1 13 11 y g y True\n",
1093 "xxxx 13 12 y a w False\n",
1094 "xxxx 13 13 y e y False\n",
1095 "xxxx 13 14 y f a False\n",
1096 "xxxx 13 15 y b e False\n",
1097 "xxxx 13 16 y f z False\n",
1098 "xxxx 13 17 y c x False\n",
1099 "xxxx 13 18 y b x False\n",
1100 "xxxx 13 19 y a f False\n",
1101 "xxxx 13 20 y b y False\n",
1102 "seq1 14 0 w ! u False\n",
1103 "xxxx 14 1 w g w False\n",
1104 "xxxx 14 2 w f g False\n",
1105 "xxxx 14 3 w h u False\n",
1106 "xxxx 14 4 w a g False\n",
1107 "xxxx 14 5 w b g False\n",
1108 "xxxx 14 6 w g f False\n",
1109 "xxxx 14 7 w g g False\n",
1110 "xxxx 14 8 w g g False\n",
1111 "xxxx 14 9 w f w False\n",
1112 "xxxx 14 10 w g y False\n",
1113 "seq1 14 11 w g w True\n",
1114 "xxxx 14 12 w a y False\n",
1115 "xxxx 14 13 w e a False\n",
1116 "xxxx 14 14 w f e False\n",
1117 "xxxx 14 15 w b z False\n",
1118 "xxxx 14 16 w f x False\n",
1119 "xxxx 14 17 w c x False\n",
1120 "xxxx 14 18 w b f False\n",
1121 "xxxx 14 19 w a y False\n",
1122 "xxxx 14 20 w b b False\n",
1123 "seq1 15 0 y ! w False\n",
1124 "xxxx 15 1 y g g False\n",
1125 "xxxx 15 2 y f u False\n",
1126 "xxxx 15 3 y h g False\n",
1127 "xxxx 15 4 y a g False\n",
1128 "xxxx 15 5 y b f False\n",
1129 "xxxx 15 6 y g g False\n",
1130 "xxxx 15 7 y g g False\n",
1131 "xxxx 15 8 y g w False\n",
1132 "xxxx 15 9 y f y False\n",
1133 "xxxx 15 10 y g w False\n",
1134 "seq1 15 11 y g y True\n",
1135 "seq2 15 12 y a a True\n",
1136 "seq2 15 13 y e e True\n",
1137 "xxxx 15 14 y f z False\n",
1138 "xxxx 15 15 y b x False\n",
1139 "xxxx 15 16 y f x False\n",
1140 "xxxx 15 17 y c f False\n",
1141 "xxxx 15 18 y b y False\n",
1142 "xxxx 15 19 y a b False\n",
1143 "xxxx 15 20 y b x False\n",
1144 "seq1 16 0 z ! g False\n",
1145 "xxxx 16 1 z g u False\n",
1146 "xxxx 16 2 z f g False\n",
1147 "xxxx 16 3 z h g False\n",
1148 "xxxx 16 4 z a f False\n",
1149 "xxxx 16 5 z b g False\n",
1150 "xxxx 16 6 z g g False\n",
1151 "xxxx 16 7 z g w False\n",
1152 "xxxx 16 8 z g y False\n",
1153 "xxxx 16 9 z f w False\n",
1154 "xxxx 16 10 z g y False\n",
1155 "xxxx 16 11 z g a False\n",
1156 "xxxx 16 12 z a e False\n",
1157 "seq1 16 13 z e z True\n",
1158 "xxxx 16 14 z f x False\n",
1159 "xxxx 16 15 z b x False\n",
1160 "xxxx 16 16 z f f False\n",
1161 "xxxx 16 17 z c y False\n",
1162 "xxxx 16 18 z b b False\n",
1163 "xxxx 16 19 z a x False\n",
1164 "xxxx 16 20 z b f False\n",
1165 "seq1 17 0 x ! u False\n",
1166 "xxxx 17 1 x g g False\n",
1167 "xxxx 17 2 x f g False\n",
1168 "xxxx 17 3 x h f False\n",
1169 "xxxx 17 4 x a g False\n",
1170 "xxxx 17 5 x b g False\n",
1171 "xxxx 17 6 x g w False\n",
1172 "xxxx 17 7 x g y False\n",
1173 "xxxx 17 8 x g w False\n",
1174 "xxxx 17 9 x f y False\n",
1175 "xxxx 17 10 x g a False\n",
1176 "xxxx 17 11 x g e False\n",
1177 "xxxx 17 12 x a z False\n",
1178 "seq1 17 13 x e x True\n",
1179 "xxxx 17 14 x f x False\n",
1180 "xxxx 17 15 x b f False\n",
1181 "xxxx 17 16 x f y False\n",
1182 "xxxx 17 17 x c b False\n",
1183 "xxxx 17 18 x b x False\n",
1184 "xxxx 17 19 x a f False\n",
1185 "xxxx 17 20 x b c False\n",
1186 "seq1 18 0 x ! g False\n",
1187 "xxxx 18 1 x g g False\n",
1188 "xxxx 18 2 x f f False\n",
1189 "xxxx 18 3 x h g False\n",
1190 "xxxx 18 4 x a g False\n",
1191 "xxxx 18 5 x b w False\n",
1192 "xxxx 18 6 x g y False\n",
1193 "xxxx 18 7 x g w False\n",
1194 "xxxx 18 8 x g y False\n",
1195 "xxxx 18 9 x f a False\n",
1196 "xxxx 18 10 x g e False\n",
1197 "xxxx 18 11 x g z False\n",
1198 "xxxx 18 12 x a x False\n",
1199 "seq1 18 13 x e x True\n",
1200 "seq2 18 14 x f f True\n",
1201 "xxxx 18 15 x b y False\n",
1202 "xxxx 18 16 x f b False\n",
1203 "xxxx 18 17 x c x False\n",
1204 "xxxx 18 18 x b f False\n",
1205 "xxxx 18 19 x a c False\n",
1206 "xxxx 18 20 x b b False\n",
1207 "seq1 19 0 y ! g False\n",
1208 "xxxx 19 1 y g f False\n",
1209 "xxxx 19 2 y f g False\n",
1210 "xxxx 19 3 y h g False\n",
1211 "xxxx 19 4 y a w False\n",
1212 "xxxx 19 5 y b y False\n",
1213 "xxxx 19 6 y g w False\n",
1214 "xxxx 19 7 y g y False\n",
1215 "xxxx 19 8 y g a False\n",
1216 "xxxx 19 9 y f e False\n",
1217 "xxxx 19 10 y g z False\n",
1218 "xxxx 19 11 y g x False\n",
1219 "xxxx 19 12 y a x False\n",
1220 "xxxx 19 13 y e f False\n",
1221 "seq1 19 14 y f y True\n",
1222 "seq2 19 15 y b b True\n",
1223 "xxxx 19 16 y f x False\n",
1224 "xxxx 19 17 y c f False\n",
1225 "xxxx 19 18 y b c False\n",
1226 "xxxx 19 19 y a b False\n",
1227 "xxxx 19 20 y b a False\n",
1228 "seq1 20 0 x ! f False\n",
1229 "xxxx 20 1 x g g False\n",
1230 "xxxx 20 2 x f g False\n",
1231 "xxxx 20 3 x h w False\n",
1232 "xxxx 20 4 x a y False\n",
1233 "xxxx 20 5 x b w False\n",
1234 "xxxx 20 6 x g y False\n",
1235 "xxxx 20 7 x g a False\n",
1236 "xxxx 20 8 x g e False\n",
1237 "xxxx 20 9 x f z False\n",
1238 "xxxx 20 10 x g x False\n",
1239 "xxxx 20 11 x g x False\n",
1240 "xxxx 20 12 x a f False\n",
1241 "xxxx 20 13 x e y False\n",
1242 "xxxx 20 14 x f b False\n",
1243 "seq1 20 15 x b x True\n",
1244 "seq2 20 16 x f f True\n",
1245 "seq2 20 17 x c c True\n",
1246 "seq2 20 18 x b b True\n",
1247 "seq2 20 19 x a a True\n",
1248 "seq2 20 20 x b b True\n",
1249 "T T . . . . . . . . . . . . . . . . . . .\n",
1250 ". T . . . . . . . . . . . . . . . . . . .\n",
1251 ". T . . . . . . . . . . . . . . . . . . .\n",
1252 ". T . . . . . . . . . . . . . . . . . . .\n",
1253 ". T T . . . . . . . . . . . . . . . . . .\n",
1254 ". . T . . . . . . . . . . . . . . . . . .\n",
1255 ". . T T . . . . . . . . . . . . . . . . .\n",
1256 ". . . T T T . . . . . . . . . . . . . . .\n",
1257 ". . . . . T . . . . . . . . . . . . . . .\n",
1258 ". . . . . T . . . . . . . . . . . . . . .\n",
1259 ". . . . . T T . . . . . . . . . . . . . .\n",
1260 ". . . . . . T T T T T T . . . . . . . . .\n",
1261 ". . . . . . . . . . . T . . . . . . . . .\n",
1262 ". . . . . . . . . . . T . . . . . . . . .\n",
1263 ". . . . . . . . . . . T . . . . . . . . .\n",
1264 ". . . . . . . . . . . T T T . . . . . . .\n",
1265 ". . . . . . . . . . . . . T . . . . . . .\n",
1266 ". . . . . . . . . . . . . T . . . . . . .\n",
1267 ". . . . . . . . . . . . . T T . . . . . .\n",
1268 ". . . . . . . . . . . . . . T T . . . . .\n",
1269 ". . . . . . . . . . . . . . . T T T T T T\n"
1274 "v, bp, t = is_interleave(s2, s1, il, return_backpointers=True, return_table=True, debug=True)\n",
1275 "print(show_table(t))"
1279 "cell_type": "code",
1280 "execution_count": 22,
1288 "'gWXUZfZXhUabYUWgUggfggWYWYaeZXXfYbXfcbab'"
1291 "execution_count": 22,
1293 "output_type": "execute_result"
1297 "show_backtrace(bp)"
1301 "cell_type": "code",
1302 "execution_count": 23,
1309 "output_type": "stream",
1311 "T T . . . . . . . . . . . . . . . . . . .\n",
1312 ". T . . . . . . . . . . . . . . . . . . .\n",
1313 ". T . . . . . . . . . . . . . . . . . . .\n",
1314 ". T . . . . . . . . . . . . . . . . . . .\n",
1315 ". T T . . . . . . . . . . . . . . . . . .\n",
1316 ". . T . . . . . . . . . . . . . . . . . .\n",
1317 ". . T T . . . . . . . . . . . . . . . . .\n",
1318 ". . . T T T . . . . . . . . . . . . . . .\n",
1319 ". . . . . T . . . . . . . . . . . . . . .\n",
1320 ". . . . . T . . . . . . . . . . . . . . .\n",
1321 ". . . . . T T . . . . . . . . . . . . . .\n",
1322 ". . . . . . T T T T T T . . . . . . . . .\n",
1323 ". . . . . . . . . . . T . . . . . . . . .\n",
1324 ". . . . . . . . . . . T . . . . . . . . .\n",
1325 ". . . . . . . . . . . T . . . . . . . . .\n",
1326 ". . . . . . . . . . . T T T . . . . . . .\n",
1327 ". . . . . . . . . . . . . T . . . . . . .\n",
1328 ". . . . . . . . . . . . . T . . . . . . .\n",
1329 ". . . . . . . . . . . . . T T . . . . . .\n",
1330 ". . . . . . . . . . . . . . T T . . . . .\n",
1331 ". . . . . . . . . . . . . . . T T T T T T\n",
1332 "gWXUZfZXhUabYUWgUggfggWYWYaeZXXfYbXfcbab\n"
1341 "execution_count": 23,
1343 "output_type": "execute_result"
1347 "v, bp, t = is_interleave(s2, s1, il, return_backpointers=True, return_table=True)\n",
1348 "print(show_table(t))\n",
1349 "print(show_backtrace(bp))\n",
1354 "cell_type": "code",
1355 "execution_count": 24,
1363 "('dcgegfedbddhhbgafhbgggcdhgbhbhghbfddbedcacbdhbafbg',\n",
1364 " 'bbbahedbceeebafgghffehgbeacgfcbhccffcacccfacgegcfc',\n",
1365 " 'dcgbbbegfeadhbedddbceheebahfbgaggfhhbgggfcdfhehggbbhbheghbfdadcgbfecbhdccacfcbdhfcabcaccffbgacgegcfc',\n",
1369 "execution_count": 24,
1371 "output_type": "execute_result"
1375 "s1 = make_string(50)\n",
1376 "s2 = make_string(50)\n",
1377 "il = interleave(s1, s2)\n",
1378 "s1, s2, il, len(il)"
1382 "cell_type": "code",
1383 "execution_count": 25,
1390 "output_type": "stream",
1392 "T T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1393 ". . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1394 ". . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1395 ". . . T T T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1396 ". . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1397 ". . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1398 ". . . . . . . . . T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1399 ". . . . . . . . . T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1400 ". . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1401 ". . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1402 ". . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1403 ". . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1404 ". . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1405 ". . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1406 ". . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1407 ". . . . . . . . . . . . . T T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1408 ". . . . . . . . . . . . . . T . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1409 ". . . . . . . . . . . . . . . . T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1410 ". . . . . . . . . . . . . . . . . T T T T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1411 ". . . . . . . . . . . . . . . . . . . . . . T T T . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1412 ". . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1413 ". . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1414 ". . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . .\n",
1415 ". . . . . . . . . . . . . . . . . . . . . . . . . T T T . . . . . . . . . . . . . . . . . . . . . . .\n",
1416 ". . . . . . . . . . . . . . . . . . . . . . . . . . T T T T T . . . . . . . . . . . . . . . . . . . .\n",
1417 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T T T T . . . . . . . . . . . . . . .\n",
1418 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . .\n",
1419 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . .\n",
1420 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . .\n",
1421 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . .\n",
1422 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . .\n",
1423 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . .\n",
1424 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T . . . . . . . . . .\n",
1425 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T T . . . . . . . .\n",
1426 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . T . . . . . . . . .\n",
1427 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T T T . . . . .\n",
1428 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . .\n",
1429 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . .\n",
1430 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . . . .\n",
1431 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . . .\n",
1432 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . .\n",
1433 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . .\n",
1434 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T T\n",
1435 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T\n",
1436 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T\n",
1437 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T\n",
1438 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T\n",
1439 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T\n",
1440 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T\n",
1441 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T\n",
1442 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T\n",
1443 "dcgBBBegfeAdHbEddDBCEhEEBAhFbgaGGfhHbgggFcdFhEHgGbBhbhEghbfdAdCGbFeCBHdcCaCFcbdhFCAbCaCCfFbgACGEGCFC\n"
1452 "execution_count": 25,
1454 "output_type": "execute_result"
1458 "v, bp, t = is_interleave(s2, s1, il, return_backpointers=True, return_table=True)\n",
1459 "print(show_table(t))\n",
1460 "print(show_backtrace(bp))\n",
1465 "cell_type": "code",
1466 "execution_count": 26,
1473 "output_type": "stream",
1475 "100 loops, best of 3: 1.77 ms per loop\n"
1481 "is_interleave(s2, s1, il)"
1485 "cell_type": "code",
1486 "execution_count": 27,
1493 "output_type": "stream",
1495 "T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1496 "T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1497 "T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1498 "T T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1499 ". . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1500 ". . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1501 ". . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1502 ". . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1503 ". . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1504 ". . . . . T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1505 ". . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1506 ". . . . . . T T T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1507 ". . . . . . . . . . T T T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1508 ". . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1509 ". . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1510 ". . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1511 ". . . . . . . . . . . . . . . T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1512 ". . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1513 ". . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1514 ". . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1515 ". . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1516 ". . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1517 ". . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1518 ". . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1519 ". . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1520 ". . . . . . . . . . . . . . . . . . . . T T T T . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1521 ". . . . . . . . . . . . . . . . . . . . . . T T T . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1522 ". . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1523 ". . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1524 ". . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1525 ". . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1526 ". . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1527 ". . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1528 ". . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1529 ". . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1530 ". . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . .\n",
1531 ". . . . . . . . . . . . . . . . . . . . . . . . . . T T T . . . . . . . . . . . . . . . . . . . . . .\n",
1532 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . .\n",
1533 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T T . . . . . . . . . . . . . . . . . .\n",
1534 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T . . . . . . . . . . . . . . . .\n",
1535 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . .\n",
1536 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T . . . . . . . . . . . . . . .\n",
1537 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . T . . . . . . . . . . . . . . .\n",
1538 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . .\n",
1539 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . .\n",
1540 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T T . . . . . . . . . . . .\n",
1541 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . .\n",
1542 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T T . . . . . . . .\n",
1543 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . .\n",
1544 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . .\n",
1545 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T T T T T T T\n",
1546 "DCGbbbEGFEaDhBedDDbceHeebaHfBGAggFhHBGGGfCDfHehgGbBHBHeGHBFDaDcgBfEcbhDcCAcfCBDHfcaBcAccfFBGacgegcfc\n"
1555 "execution_count": 27,
1557 "output_type": "execute_result"
1561 "v, bp, t = is_interleave(s1, s2, il, return_backpointers=True, return_table=True)\n",
1562 "print(show_table(t))\n",
1563 "print(show_backtrace(bp))\n",
1568 "cell_type": "code",
1569 "execution_count": 28,
1580 "execution_count": 28,
1582 "output_type": "execute_result"
1586 "show_backtrace(bp).lower() == il"
1590 "cell_type": "code",
1591 "execution_count": 29,
1599 "('aebeedbbfabfbddehbagecgaadbbedaedghchdaghhaghedhbe', False, False)"
1602 "execution_count": 29,
1604 "output_type": "execute_result"
1608 "s3 = make_string(50)\n",
1609 "s3, is_interleave(s1, s3, il), is_interleave(s2, s3, il)"
1613 "cell_type": "code",
1614 "execution_count": 30,
1621 "output_type": "stream",
1623 "T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1624 "T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1625 "T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1626 "T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1627 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1628 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1629 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1630 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1631 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1632 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1633 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1634 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1635 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1636 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1637 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1638 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1639 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1640 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1641 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1642 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1643 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1644 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1645 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1646 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1647 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1648 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1649 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1650 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1651 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1652 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1653 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1654 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1655 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1656 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1657 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1658 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1659 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1660 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1661 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1662 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1663 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1664 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1665 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1666 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1667 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1668 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1669 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1670 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1671 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1672 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1673 ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n",
1683 "execution_count": 30,
1685 "output_type": "execute_result"
1689 "v, bp, t = is_interleave(s1, s3, il, return_backpointers=True, return_table=True)\n",
1690 "print(show_table(t))\n",
1691 "print(show_backtrace(bp))\n",
1696 "cell_type": "code",
1697 "execution_count": 31,
1703 "def is_interleave_recursive(s1, s2, s3):\n",
1705 " return s2 == s3\n",
1707 " return s1 == s3\n",
1709 " if s1[-1] == s2[-1] and s1[-1] == s3[-1]:\n",
1710 " return is_interleave_recursive(s1[:-1], s2, s3[:-1]) or is_interleave(s1, s2[:-1], s3[:-1])\n",
1711 " elif s1[-1] == s3[-1]:\n",
1712 " return is_interleave_recursive(s1[:-1], s2, s3[:-1])\n",
1713 " elif s2[-1] == s3[-1]:\n",
1714 " return is_interleave(s1, s2[:-1], s3[:-1])\n",
1720 "cell_type": "code",
1721 "execution_count": 32,
1727 "s1 = make_string(500)\n",
1728 "s2 = make_string(500)\n",
1729 "s3 = make_string(500)\n",
1730 "s12 = interleave(s1, s2)\n",
1731 "s23 = interleave(s2, s3)"
1735 "cell_type": "code",
1736 "execution_count": 33,
1747 "execution_count": 33,
1749 "output_type": "execute_result"
1753 "is_interleave_recursive(s1, s2, s12)"
1757 "cell_type": "code",
1758 "execution_count": 34,
1769 "execution_count": 34,
1771 "output_type": "execute_result"
1775 "is_interleave_recursive(s1, s2, s23)"
1779 "cell_type": "markdown",
1786 "cell_type": "code",
1787 "execution_count": 35,
1793 "def show_annotated_table(table, bps):\n",
1794 " return '\\n'.join(' '.join('*' if (i, j) == (0, 0) else bps[i, j][2] if table[i, j] else '.' for j in sorted(set([k[1] for k in table])))\n",
1795 " for i in sorted(set([k[0] for k in table])))"
1799 "cell_type": "code",
1800 "execution_count": 36,
1806 "def show_backtrace_star(bps):\n",
1807 " i = max([0] + [k[0] for k in bps])\n",
1808 " j = max([0] + [k[1] for k in bps])\n",
1811 " if (i, j) in bps:\n",
1812 " while i != 0 or j != 0:\n",
1813 " chars += bps[i, j][2]\n",
1814 " if bps[i, j][3] == 'seq1':\n",
1818 " i, j = bps[i, j][0], bps[i, j][1] \n",
1819 " return ''.join(list(reversed(chars))) + '\\n' + ''.join(list(reversed(stars)))\n",
1825 "cell_type": "code",
1826 "execution_count": 37,
1834 "('badbabcddb', 'dcaacccbaa', 'bdacaacccdbbabacdadb', 20)"
1837 "execution_count": 37,
1839 "output_type": "execute_result"
1843 "s1 = make_string(10, alphabet='abcd')\n",
1844 "s2 = make_string(10, alphabet='abcd')\n",
1845 "s3 = make_string(10, alphabet='abcd')\n",
1846 "il = interleave(s1, s2)\n",
1847 "s1, s2, il, len(il)"
1851 "cell_type": "code",
1852 "execution_count": 38,
1859 "output_type": "stream",
1861 "* . . . . . . . . . .\n",
1862 "b d . . . . . . . . .\n",
1863 ". a c a a c c c . . .\n",
1864 ". . . . . . . d b . .\n",
1865 ". . . . . . . b b a .\n",
1866 ". . . . . . . . a . .\n",
1867 ". . . . . . . . b a .\n",
1868 ". . . . . . . . . c .\n",
1869 ". . . . . . . . . d a\n",
1870 ". . . . . . . . . . d\n",
1871 ". . . . . . . . . . b\n",
1872 "BdAcaacccDbBABaCDaDB\n",
1873 "bdacaacccdbbabacdadb\n",
1883 "execution_count": 38,
1885 "output_type": "execute_result"
1889 "v, bp, t = is_interleave(s1, s2, il, return_backpointers=True, return_table=True)\n",
1890 "print(show_annotated_table(t, bp))\n",
1891 "print(show_backtrace(bp))\n",
1892 "print(show_backtrace_star(bp))\n",
1897 "cell_type": "code",
1898 "execution_count": 39,
1905 "output_type": "stream",
1907 "* b . . . . . . . . .\n",
1908 ". d a . . . . . . . .\n",
1909 ". . c . . . . . . . .\n",
1910 ". . a . . . . . . . .\n",
1911 ". . a . . . . . . . .\n",
1912 ". . c . . . . . . . .\n",
1913 ". . c . . . . . . . .\n",
1914 ". . c d b . . . . . .\n",
1915 ". . . b b a b . . . .\n",
1916 ". . . . a . a c d . .\n",
1917 ". . . . . . . . a d b\n",
1918 "bDaCAACCCdbBabAcdAdb\n",
1919 "bdacaacccdbbabacdadb\n",
1920 " * ****** * * * \n"
1929 "execution_count": 39,
1931 "output_type": "execute_result"
1935 "v, bp, t = is_interleave(s2, s1, il, return_backpointers=True, return_table=True)\n",
1936 "print(show_annotated_table(t, bp))\n",
1937 "print(show_backtrace(bp))\n",
1938 "print(show_backtrace_star(bp))\n",
1943 "cell_type": "code",
1944 "execution_count": 40,
1951 "output_type": "stream",
1953 "* . . . . . . . . . .\n",
1954 "b . . . . . . . . . .\n",
1955 ". . . . . . . . . . .\n",
1956 ". . . . . . . . . . .\n",
1957 ". . . . . . . . . . .\n",
1958 ". . . . . . . . . . .\n",
1959 ". . . . . . . . . . .\n",
1960 ". . . . . . . . . . .\n",
1961 ". . . . . . . . . . .\n",
1962 ". . . . . . . . . . .\n",
1963 ". . . . . . . . . . .\n",
1975 "execution_count": 40,
1977 "output_type": "execute_result"
1981 "v, bp, t = is_interleave(s1, s3, il, return_backpointers=True, return_table=True)\n",
1982 "print(show_annotated_table(t, bp))\n",
1983 "print(show_backtrace(bp))\n",
1984 "print(show_backtrace_star(bp))\n",
1989 "cell_type": "code",
1990 "execution_count": 41,
1997 "output_type": "stream",
1999 "* . . . . . . . . . .\n",
2000 ". . . . . . . . . . .\n",
2001 ". . . . . . . . . . .\n",
2002 ". . . . . . . . . . .\n",
2003 ". . . . . . . . . . .\n",
2004 ". . . . . . . . . . .\n",
2005 ". . . . . . . . . . .\n",
2006 ". . . . . . . . . . .\n",
2007 ". . . . . . . . . . .\n",
2008 ". . . . . . . . . . .\n",
2009 ". . . . . . . . . . .\n",
2020 "execution_count": 41,
2022 "output_type": "execute_result"
2026 "v, bp, t = is_interleave(s2, s3, il, return_backpointers=True, return_table=True)\n",
2027 "print(show_annotated_table(t, bp))\n",
2028 "print(show_backtrace(bp))\n",
2029 "print(show_backtrace_star(bp))\n",
2034 "cell_type": "markdown",
2039 "# Make puzzle data"
2043 "cell_type": "code",
2044 "execution_count": 58,
2050 "my_bill = make_string(200)\n",
2051 "friend_bill = make_string(200)\n",
2052 "other_bills = [make_string(200) for _ in range(98)]\n",
2054 "target_interleaved = interleave(my_bill, friend_bill)\n",
2055 "mine_interleaved = [interleave(my_bill, o) for o in random.sample(other_bills, 24)]\n",
2056 "friend_interleaved = [interleave(friend_bill, o) for o in random.sample(other_bills, 13)]\n",
2057 "other_interleaved = []\n",
2058 "for _ in range(103):\n",
2059 " s1, s2 = random.sample(other_bills, 2)\n",
2060 " other_interleaved += [interleave(s1, s2)]"
2064 "cell_type": "code",
2065 "execution_count": 59,
2071 "all_targets = [target_interleaved] + mine_interleaved + friend_interleaved + other_interleaved"
2075 "cell_type": "code",
2076 "execution_count": 60,
2083 "output_type": "stream",
2085 "CPU times: user 4.55 s, sys: 4 ms, total: 4.56 s\n",
2086 "Wall time: 4.56 s\n"
2095 "execution_count": 60,
2097 "output_type": "execute_result"
2101 "%time [i for i, s12 in enumerate(all_targets) if is_interleave(my_bill, friend_bill, s12)]"
2105 "cell_type": "code",
2106 "execution_count": 61,
2113 "output_type": "stream",
2115 "CPU times: user 1.03 s, sys: 4 ms, total: 1.04 s\n",
2116 "Wall time: 1.03 s\n"
2125 "execution_count": 61,
2127 "output_type": "execute_result"
2131 "%time [i for i, s12 in enumerate(all_targets) if is_interleave_recursive(my_bill, friend_bill, s12)]"
2135 "cell_type": "code",
2136 "execution_count": 62,
2142 "bill_set = all_targets + random.sample(other_bills, 8)\n",
2143 "random.shuffle(bill_set)\n",
2144 "bill_set = [my_bill, friend_bill] + bill_set\n",
2146 "with open('09-bills.txt', 'w') as f:\n",
2147 " for i, b in enumerate(bill_set):\n",
2148 " f.write('{}: {}\\n'.format(i, b))\n"
2152 "cell_type": "code",
2153 "execution_count": null,
2163 "display_name": "Python 3",
2164 "language": "python",
2168 "codemirror_mode": {
2172 "file_extension": ".py",
2173 "mimetype": "text/x-python",
2175 "nbconvert_exporter": "python",
2176 "pygments_lexer": "ipython3",