X-Git-Url: https://git.njae.me.uk/?a=blobdiff_plain;f=09-resolving-the-bill%2Finterleaving.ipynb;h=4dc92780fe508dfc3c18c927ef3f64b1a2718aae;hb=7feed95175973490721236795cc7895e252965e2;hp=a132809fa6ef8e9de8f6d91ef87c20b877448f1d;hpb=04f50ec2a6f35bc907c07d1a04c5f5113c7ee46f;p=ou-summer-of-code-2017.git diff --git a/09-resolving-the-bill/interleaving.ipynb b/09-resolving-the-bill/interleaving.ipynb index a132809..4dc9278 100644 --- a/09-resolving-the-bill/interleaving.ipynb +++ b/09-resolving-the-bill/interleaving.ipynb @@ -19,7 +19,7 @@ }, { "cell_type": "code", - "execution_count": 1, + "execution_count": 2, "metadata": { "collapsed": true }, @@ -31,7 +31,19 @@ }, { "cell_type": "code", - "execution_count": 2, + "execution_count": 47, + "metadata": { + "collapsed": true + }, + "outputs": [], + "source": [ + "import sys\n", + "sys.setrecursionlimit(10**6)" + ] + }, + { + "cell_type": "code", + "execution_count": 3, "metadata": { "collapsed": true }, @@ -46,10 +58,8 @@ }, { "cell_type": "code", - "execution_count": 3, - "metadata": { - "collapsed": false - }, + "execution_count": 4, + "metadata": {}, "outputs": [ { "data": { @@ -57,7 +67,7 @@ "[(0, ''), (1, 'a'), (2, 'aa'), (3, 'aab'), (4, 'aabc'), (5, 'aabcc')]" ] }, - "execution_count": 3, + "execution_count": 4, "metadata": {}, "output_type": "execute_result" } @@ -75,10 +85,8 @@ }, { "cell_type": "code", - "execution_count": 4, - "metadata": { - "collapsed": false - }, + "execution_count": 5, + "metadata": {}, "outputs": [ { "data": { @@ -91,7 +99,7 @@ " [False, False, False, False, False, False]]" ] }, - "execution_count": 4, + "execution_count": 5, "metadata": {}, "output_type": "execute_result" } @@ -104,9 +112,8 @@ }, { "cell_type": "code", - "execution_count": 5, + "execution_count": 6, "metadata": { - "collapsed": false, "scrolled": true }, "outputs": [ @@ -151,7 +158,7 @@ " (5, 5): False}" ] }, - "execution_count": 5, + "execution_count": 6, "metadata": {}, "output_type": "execute_result" } @@ -165,7 +172,7 @@ }, { "cell_type": "code", - "execution_count": 6, + "execution_count": 7, "metadata": { "collapsed": true }, @@ -179,7 +186,7 @@ }, { "cell_type": "code", - "execution_count": 7, + "execution_count": 8, "metadata": { "collapsed": true }, @@ -193,10 +200,8 @@ }, { "cell_type": "code", - "execution_count": 8, - "metadata": { - "collapsed": false - }, + "execution_count": 9, + "metadata": {}, "outputs": [ { "name": "stdout", @@ -217,16 +222,14 @@ }, { "cell_type": "code", - "execution_count": 9, - "metadata": { - "collapsed": false - }, + "execution_count": 10, + "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ - "aabcc dbbca aadbbbaccc\n", + "aabcc dbbca aadbbcbcac\n", "aa 0 0 ! ! ! True\n", "s2 0 1 ! d a False\n", "s2 0 2 ! b a False\n", @@ -238,39 +241,39 @@ "xx 1 2 a b d False\n", "xx 1 3 a b b False\n", "xx 1 4 a c b False\n", - "xx 1 5 a a b False\n", + "xx 1 5 a a c False\n", "s1 2 0 a ! a True\n", "s2 2 1 a d d True\n", "s2 2 2 a b b True\n", "s2 2 3 a b b True\n", - "xx 2 4 a c b False\n", - "xx 2 5 a a a False\n", + "s2 2 4 a c c True\n", + "xx 2 5 a a b False\n", "s1 3 0 b ! d False\n", "s1 3 1 b d b True\n", "s2 3 2 b b b True\n", "s1 3 2 b b b True\n", - "s2 3 3 b b b True\n", - "s1 3 3 b b b True\n", - "xx 3 4 b c a False\n", + "xx 3 3 b b c False\n", + "s1 3 4 b c b True\n", "xx 3 5 b a c False\n", "s1 4 0 c ! b False\n", "xx 4 1 c d b False\n", - "xx 4 2 c b b False\n", - "xx 4 3 c b a False\n", - "xx 4 4 c c c False\n", - "xx 4 5 c a c False\n", + "s1 4 2 c b c True\n", + "s2 4 3 c b b True\n", + "s2 4 4 c c c True\n", + "s1 4 4 c c c True\n", + "s2 4 5 c a a True\n", "s1 5 0 c ! b False\n", - "xx 5 1 c d b False\n", - "xx 5 2 c b a False\n", - "xx 5 3 c b c False\n", - "xx 5 4 c c c False\n", - "xx 5 5 c a c False\n", + "xx 5 1 c d c False\n", + "xx 5 2 c b b False\n", + "s1 5 3 c b c True\n", + "xx 5 4 c c a False\n", + "s1 5 5 c a c True\n", "T . . . . .\n", "T . . . . .\n", - "T T T T . .\n", - ". T T T . .\n", - ". . . . . .\n", - ". . . . . .\n" + "T T T T T .\n", + ". T T . T .\n", + ". . T T T T\n", + ". . . T . T\n" ] }, { @@ -281,18 +284,25 @@ " (2, 1): (2, 0, 'd', 's2'),\n", " (2, 2): (2, 1, 'b', 's2'),\n", " (2, 3): (2, 2, 'b', 's2'),\n", + " (2, 4): (2, 3, 'c', 's2'),\n", " (3, 1): (2, 1, 'b', 's1'),\n", " (3, 2): (2, 2, 'b', 's1'),\n", - " (3, 3): (2, 3, 'b', 's1')}" + " (3, 4): (2, 4, 'b', 's1'),\n", + " (4, 2): (3, 2, 'c', 's1'),\n", + " (4, 3): (4, 2, 'b', 's2'),\n", + " (4, 4): (3, 4, 'c', 's1'),\n", + " (4, 5): (4, 4, 'a', 's2'),\n", + " (5, 3): (4, 3, 'c', 's1'),\n", + " (5, 5): (4, 5, 'c', 's1')}" ] }, - "execution_count": 9, + "execution_count": 10, "metadata": {}, "output_type": "execute_result" } ], "source": [ - "s3 = s3f\n", + "s3 = s3t\n", "\n", "print(s1, s2, s3)\n", "\n", @@ -339,7 +349,7 @@ }, { "cell_type": "code", - "execution_count": 10, + "execution_count": 11, "metadata": { "collapsed": true }, @@ -415,10 +425,8 @@ }, { "cell_type": "code", - "execution_count": 11, - "metadata": { - "collapsed": false - }, + "execution_count": 12, + "metadata": {}, "outputs": [ { "data": { @@ -426,7 +434,7 @@ "True" ] }, - "execution_count": 11, + "execution_count": 12, "metadata": {}, "output_type": "execute_result" } @@ -437,10 +445,8 @@ }, { "cell_type": "code", - "execution_count": 12, - "metadata": { - "collapsed": false - }, + "execution_count": 13, + "metadata": {}, "outputs": [ { "data": { @@ -463,7 +469,7 @@ " (5, 5): (4, 5, 'c', 'seq1')})" ] }, - "execution_count": 12, + "execution_count": 13, "metadata": {}, "output_type": "execute_result" } @@ -474,9 +480,8 @@ }, { "cell_type": "code", - "execution_count": 13, + "execution_count": 14, "metadata": { - "collapsed": false, "scrolled": true }, "outputs": [ @@ -537,7 +542,7 @@ " (5, 5): True})" ] }, - "execution_count": 13, + "execution_count": 14, "metadata": {}, "output_type": "execute_result" } @@ -548,10 +553,8 @@ }, { "cell_type": "code", - "execution_count": 14, - "metadata": { - "collapsed": false - }, + "execution_count": 15, + "metadata": {}, "outputs": [ { "data": { @@ -559,7 +562,7 @@ "False" ] }, - "execution_count": 14, + "execution_count": 15, "metadata": {}, "output_type": "execute_result" } @@ -570,10 +573,8 @@ }, { "cell_type": "code", - "execution_count": 15, - "metadata": { - "collapsed": false - }, + "execution_count": 16, + "metadata": {}, "outputs": [ { "name": "stdout", @@ -614,7 +615,7 @@ " (4, 3): (4, 2, 'b', 'seq2')})" ] }, - "execution_count": 15, + "execution_count": 16, "metadata": {}, "output_type": "execute_result" } @@ -625,7 +626,7 @@ }, { "cell_type": "code", - "execution_count": 16, + "execution_count": 17, "metadata": { "collapsed": true }, @@ -649,7 +650,7 @@ }, { "cell_type": "code", - "execution_count": 17, + "execution_count": 18, "metadata": { "collapsed": true }, @@ -663,18 +664,16 @@ }, { "cell_type": "code", - "execution_count": 18, - "metadata": { - "collapsed": false - }, + "execution_count": 19, + "metadata": {}, "outputs": [ { "data": { "text/plain": [ - "'acdcfgfcgdhagedbdccbgefgbfbgaacbfbdcebehaeccgadghe'" + "'fcafghacdbdhegdbdfbbbghecebceaecbhbfgaedaggbbfefcd'" ] }, - "execution_count": 18, + "execution_count": 19, "metadata": {}, "output_type": "execute_result" } @@ -685,7 +684,7 @@ }, { "cell_type": "code", - "execution_count": 19, + "execution_count": 20, "metadata": { "collapsed": true }, @@ -726,63 +725,65 @@ }, { "cell_type": "code", - "execution_count": 20, - "metadata": { - "collapsed": false - }, + "execution_count": 21, + "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "0 0 0 adding g\n", - "1 0 1 adding w\n", - "1 1 0 adding x\n", - "1 2 -1 adding u\n", - "1 3 -2 adding z\n", - "1 4 -3 adding f\n", - "2 4 -2 adding z\n", - "2 5 -3 adding x\n", - "2 6 -4 adding h\n", - "3 6 -3 adding u\n", - "3 7 -4 adding a\n", - "4 7 -3 adding b\n", - "5 7 -2 adding y\n", - "5 8 -3 adding u\n", - "5 9 -4 adding w\n", - "5 10 -5 adding g\n", - "6 10 -4 adding u\n", - "6 11 -5 adding g\n", - "7 11 -4 adding g\n", - "8 11 -3 adding f\n", - "9 11 -2 adding g\n", - "10 11 -1 adding g\n", - "11 11 0 adding w\n", - "11 12 -1 adding y\n", - "11 13 -2 adding w\n", - "11 14 -3 adding y\n", - "11 15 -4 adding a\n", - "12 15 -3 adding e\n", - "13 15 -2 adding z\n", - "13 16 -3 adding x\n", - "13 17 -4 adding x\n", - "13 18 -5 adding f\n", - "14 18 -4 adding y\n", - "14 19 -5 adding b\n", - "15 19 -4 adding x\n", - "15 20 -5 remaining s1 fcbab\n" + "1 0 1 adding f\n", + "2 0 2 adding z\n", + "2 1 1 adding e\n", + "3 1 2 adding y\n", + "3 2 1 adding g\n", + "4 2 2 adding f\n", + "5 2 3 adding a\n", + "6 2 4 adding z\n", + "6 3 3 adding v\n", + "6 4 2 adding y\n", + "6 5 1 adding u\n", + "6 6 0 adding z\n", + "6 7 -1 adding h\n", + "7 7 0 adding v\n", + "7 8 -1 adding g\n", + "8 8 0 adding d\n", + "9 8 1 adding u\n", + "9 9 0 adding z\n", + "9 10 -1 adding a\n", + "10 10 0 adding z\n", + "10 11 -1 adding y\n", + "10 12 -2 adding w\n", + "10 13 -3 adding a\n", + "11 13 -2 adding f\n", + "12 13 -1 adding g\n", + "13 13 0 adding g\n", + "14 13 1 adding f\n", + "15 13 2 adding h\n", + "16 13 3 adding x\n", + "16 14 2 adding w\n", + "16 15 1 adding a\n", + "17 15 2 adding e\n", + "18 15 3 adding w\n", + "18 16 2 adding d\n", + "19 16 3 adding x\n", + "19 17 2 adding u\n", + "19 18 1 adding z\n", + "19 19 0 adding x\n", + "19 20 -1 remaining s1 g\n" ] }, { "data": { "text/plain": [ - "('gfhabgggfggaefbfcbab',\n", - " 'wxuzzxuyuwuwywyzxxyx',\n", - " 'gwxuzfzxhuabyuwguggfggwywyaezxxfybxfcbab',\n", + "('gfegfahgdaafggfhaedg',\n", + " 'zyzvyuzvuzzywxwwxuzx',\n", + " 'gfzeygfazvyuzhvgduzazywafggfhxwaewdxuzxg',\n", " 40)" ] }, - "execution_count": 20, + "execution_count": 21, "metadata": {}, "output_type": "execute_result" } @@ -796,10 +797,8 @@ }, { "cell_type": "code", - "execution_count": 21, - "metadata": { - "collapsed": false - }, + "execution_count": 22, + "metadata": {}, "outputs": [ { "name": "stdout", @@ -807,466 +806,466 @@ "text": [ "xxxx 0 0 ! ! ! True\n", "seq2 0 1 ! g g True\n", - "seq2 0 2 ! f w False\n", - "seq2 0 3 ! h x False\n", - "seq2 0 4 ! a u False\n", - "seq2 0 5 ! b z False\n", - "seq2 0 6 ! g f False\n", - "seq2 0 7 ! g z False\n", - "seq2 0 8 ! g x False\n", - "seq2 0 9 ! f h False\n", - "seq2 0 10 ! g u False\n", - "seq2 0 11 ! g a False\n", - "seq2 0 12 ! a b False\n", - "seq2 0 13 ! e y False\n", - "seq2 0 14 ! f u False\n", - "seq2 0 15 ! b w False\n", - "seq2 0 16 ! f g False\n", - "seq2 0 17 ! c u False\n", - "seq2 0 18 ! b g False\n", - "seq2 0 19 ! a g False\n", - "seq2 0 20 ! b f False\n", - "seq1 1 0 w ! g False\n", - "seq1 1 1 w g w True\n", - "xxxx 1 2 w f x False\n", - "xxxx 1 3 w h u False\n", - "xxxx 1 4 w a z False\n", - "xxxx 1 5 w b f False\n", - "xxxx 1 6 w g z False\n", - "xxxx 1 7 w g x False\n", - "xxxx 1 8 w g h False\n", - "xxxx 1 9 w f u False\n", - "xxxx 1 10 w g a False\n", - "xxxx 1 11 w g b False\n", - "xxxx 1 12 w a y False\n", - "xxxx 1 13 w e u False\n", - "xxxx 1 14 w f w False\n", - "xxxx 1 15 w b g False\n", - "xxxx 1 16 w f u False\n", - "xxxx 1 17 w c g False\n", - "xxxx 1 18 w b g False\n", - "xxxx 1 19 w a f False\n", - "xxxx 1 20 w b g False\n", - "seq1 2 0 x ! w False\n", - "seq1 2 1 x g x True\n", - "xxxx 2 2 x f u False\n", - "xxxx 2 3 x h z False\n", - "xxxx 2 4 x a f False\n", - "xxxx 2 5 x b z False\n", - "xxxx 2 6 x g x False\n", - "xxxx 2 7 x g h False\n", - "xxxx 2 8 x g u False\n", - "xxxx 2 9 x f a False\n", - "xxxx 2 10 x g b False\n", - "xxxx 2 11 x g y False\n", - "xxxx 2 12 x a u False\n", - "xxxx 2 13 x e w False\n", - "xxxx 2 14 x f g False\n", - "xxxx 2 15 x b u False\n", - "xxxx 2 16 x f g False\n", - "xxxx 2 17 x c g False\n", - "xxxx 2 18 x b f False\n", - "xxxx 2 19 x a g False\n", - "xxxx 2 20 x b g False\n", - "seq1 3 0 u ! x False\n", - "seq1 3 1 u g u True\n", - "xxxx 3 2 u f z False\n", - "xxxx 3 3 u h f False\n", - "xxxx 3 4 u a z False\n", - "xxxx 3 5 u b x False\n", - "xxxx 3 6 u g h False\n", - "xxxx 3 7 u g u False\n", - "xxxx 3 8 u g a False\n", - "xxxx 3 9 u f b False\n", - "xxxx 3 10 u g y False\n", - "xxxx 3 11 u g u False\n", - "xxxx 3 12 u a w False\n", - "xxxx 3 13 u e g False\n", - "xxxx 3 14 u f u False\n", - "xxxx 3 15 u b g False\n", - "xxxx 3 16 u f g False\n", - "xxxx 3 17 u c f False\n", - "xxxx 3 18 u b g False\n", - "xxxx 3 19 u a g False\n", - "xxxx 3 20 u b w False\n", - "seq1 4 0 z ! u False\n", - "seq1 4 1 z g z True\n", - "seq2 4 2 z f f True\n", - "xxxx 4 3 z h z False\n", - "xxxx 4 4 z a x False\n", - "xxxx 4 5 z b h False\n", - "xxxx 4 6 z g u False\n", - "xxxx 4 7 z g a False\n", - "xxxx 4 8 z g b False\n", - "xxxx 4 9 z f y False\n", - "xxxx 4 10 z g u False\n", - "xxxx 4 11 z g w False\n", - "xxxx 4 12 z a g False\n", - "xxxx 4 13 z e u False\n", - "xxxx 4 14 z f g False\n", - "xxxx 4 15 z b g False\n", - "xxxx 4 16 z f f False\n", - "xxxx 4 17 z c g False\n", - "xxxx 4 18 z b g False\n", - "xxxx 4 19 z a w False\n", - "xxxx 4 20 z b y False\n", - "seq1 5 0 z ! z False\n", - "xxxx 5 1 z g f False\n", - "seq1 5 2 z f z True\n", - "xxxx 5 3 z h x False\n", - "xxxx 5 4 z a h False\n", - "xxxx 5 5 z b u False\n", - "xxxx 5 6 z g a False\n", - "xxxx 5 7 z g b False\n", - "xxxx 5 8 z g y False\n", - "xxxx 5 9 z f u False\n", - "xxxx 5 10 z g w False\n", - "xxxx 5 11 z g g False\n", - "xxxx 5 12 z a u False\n", - "xxxx 5 13 z e g False\n", - "xxxx 5 14 z f g False\n", - "xxxx 5 15 z b f False\n", - "xxxx 5 16 z f g False\n", - "xxxx 5 17 z c g False\n", - "xxxx 5 18 z b w False\n", - "xxxx 5 19 z a y False\n", - "xxxx 5 20 z b w False\n", - "seq1 6 0 x ! f False\n", - "xxxx 6 1 x g z False\n", - "seq1 6 2 x f x True\n", - "seq2 6 3 x h h True\n", - "xxxx 6 4 x a u False\n", - "xxxx 6 5 x b a False\n", - "xxxx 6 6 x g b False\n", - "xxxx 6 7 x g y False\n", - "xxxx 6 8 x g u False\n", - "xxxx 6 9 x f w False\n", - "xxxx 6 10 x g g False\n", - "xxxx 6 11 x g u False\n", - "xxxx 6 12 x a g False\n", - "xxxx 6 13 x e g False\n", - "xxxx 6 14 x f f False\n", - "xxxx 6 15 x b g False\n", - "xxxx 6 16 x f g False\n", - "xxxx 6 17 x c w False\n", - "xxxx 6 18 x b y False\n", - "xxxx 6 19 x a w False\n", - "xxxx 6 20 x b y False\n", - "seq1 7 0 u ! z False\n", - "xxxx 7 1 u g x False\n", - "xxxx 7 2 u f h False\n", - "seq1 7 3 u h u True\n", - "seq2 7 4 u a a True\n", - "seq2 7 5 u b b True\n", - "xxxx 7 6 u g y False\n", - "xxxx 7 7 u g u False\n", - "xxxx 7 8 u g w False\n", - "xxxx 7 9 u f g False\n", - "xxxx 7 10 u g u False\n", - "xxxx 7 11 u g g False\n", - "xxxx 7 12 u a g False\n", - "xxxx 7 13 u e f False\n", - "xxxx 7 14 u f g False\n", - "xxxx 7 15 u b g False\n", - "xxxx 7 16 u f w False\n", - "xxxx 7 17 u c y False\n", - "xxxx 7 18 u b w False\n", - "xxxx 7 19 u a y False\n", - "xxxx 7 20 u b a False\n", - "seq1 8 0 y ! x False\n", - "xxxx 8 1 y g h False\n", - "xxxx 8 2 y f u False\n", - "xxxx 8 3 y h a False\n", - "xxxx 8 4 y a b False\n", - "seq1 8 5 y b y True\n", - "xxxx 8 6 y g u False\n", - "xxxx 8 7 y g w False\n", - "xxxx 8 8 y g g False\n", - "xxxx 8 9 y f u False\n", - "xxxx 8 10 y g g False\n", - "xxxx 8 11 y g g False\n", - "xxxx 8 12 y a f False\n", - "xxxx 8 13 y e g False\n", - "xxxx 8 14 y f g False\n", - "xxxx 8 15 y b w False\n", - "xxxx 8 16 y f y False\n", - "xxxx 8 17 y c w False\n", - "xxxx 8 18 y b y False\n", - "xxxx 8 19 y a a False\n", - "xxxx 8 20 y b e False\n", - "seq1 9 0 u ! h False\n", - "xxxx 9 1 u g u False\n", - "xxxx 9 2 u f a False\n", - "xxxx 9 3 u h b False\n", - "xxxx 9 4 u a y False\n", - "seq1 9 5 u b u True\n", - "xxxx 9 6 u g w False\n", - "xxxx 9 7 u g g False\n", - "xxxx 9 8 u g u False\n", - "xxxx 9 9 u f g False\n", - "xxxx 9 10 u g g False\n", - "xxxx 9 11 u g f False\n", - "xxxx 9 12 u a g False\n", - "xxxx 9 13 u e g False\n", - "xxxx 9 14 u f w False\n", - "xxxx 9 15 u b y False\n", - "xxxx 9 16 u f w False\n", - "xxxx 9 17 u c y False\n", - "xxxx 9 18 u b a False\n", - "xxxx 9 19 u a e False\n", - "xxxx 9 20 u b z False\n", - "seq1 10 0 w ! u False\n", - "xxxx 10 1 w g a False\n", - "xxxx 10 2 w f b False\n", - "xxxx 10 3 w h y False\n", - "xxxx 10 4 w a u False\n", - "seq1 10 5 w b w True\n", - "seq2 10 6 w g g True\n", - "xxxx 10 7 w g u False\n", - "xxxx 10 8 w g g False\n", - "xxxx 10 9 w f g False\n", - "xxxx 10 10 w g f False\n", - "xxxx 10 11 w g g False\n", - "xxxx 10 12 w a g False\n", - "xxxx 10 13 w e w False\n", - "xxxx 10 14 w f y False\n", - "xxxx 10 15 w b w False\n", - "xxxx 10 16 w f y False\n", - "xxxx 10 17 w c a False\n", - "xxxx 10 18 w b e False\n", - "xxxx 10 19 w a z False\n", - "xxxx 10 20 w b x False\n", - "seq1 11 0 u ! a False\n", - "xxxx 11 1 u g b False\n", - "xxxx 11 2 u f y False\n", - "xxxx 11 3 u h u False\n", - "xxxx 11 4 u a w False\n", - "xxxx 11 5 u b g False\n", - "seq1 11 6 u g u True\n", - "seq2 11 7 u g g True\n", - "seq2 11 8 u g g True\n", - "seq2 11 9 u f f True\n", - "seq2 11 10 u g g True\n", - "seq2 11 11 u g g True\n", - "xxxx 11 12 u a w False\n", - "xxxx 11 13 u e y False\n", - "xxxx 11 14 u f w False\n", - "xxxx 11 15 u b y False\n", - "xxxx 11 16 u f a False\n", - "xxxx 11 17 u c e False\n", - "xxxx 11 18 u b z False\n", - "xxxx 11 19 u a x False\n", - "xxxx 11 20 u b x False\n", - "seq1 12 0 w ! b False\n", - "xxxx 12 1 w g y False\n", - "xxxx 12 2 w f u False\n", - "xxxx 12 3 w h w False\n", - "xxxx 12 4 w a g False\n", - "xxxx 12 5 w b u False\n", - "xxxx 12 6 w g g False\n", - "xxxx 12 7 w g g False\n", - "xxxx 12 8 w g f False\n", - "xxxx 12 9 w f g False\n", - "xxxx 12 10 w g g False\n", - "seq1 12 11 w g w True\n", - "xxxx 12 12 w a y False\n", - "xxxx 12 13 w e w False\n", - "xxxx 12 14 w f y False\n", - "xxxx 12 15 w b a False\n", - "xxxx 12 16 w f e False\n", - "xxxx 12 17 w c z False\n", - "xxxx 12 18 w b x False\n", - "xxxx 12 19 w a x False\n", - "xxxx 12 20 w b f False\n", - "seq1 13 0 y ! y False\n", - "xxxx 13 1 y g u False\n", - "xxxx 13 2 y f w False\n", - "xxxx 13 3 y h g False\n", - "xxxx 13 4 y a u False\n", - "xxxx 13 5 y b g False\n", - "xxxx 13 6 y g g False\n", - "xxxx 13 7 y g f False\n", - "xxxx 13 8 y g g False\n", - "xxxx 13 9 y f g False\n", - "xxxx 13 10 y g w False\n", - "seq1 13 11 y g y True\n", - "xxxx 13 12 y a w False\n", - "xxxx 13 13 y e y False\n", - "xxxx 13 14 y f a False\n", - "xxxx 13 15 y b e False\n", - "xxxx 13 16 y f z False\n", - "xxxx 13 17 y c x False\n", - "xxxx 13 18 y b x False\n", - "xxxx 13 19 y a f False\n", - "xxxx 13 20 y b y False\n", - "seq1 14 0 w ! u False\n", - "xxxx 14 1 w g w False\n", - "xxxx 14 2 w f g False\n", - "xxxx 14 3 w h u False\n", - "xxxx 14 4 w a g False\n", - "xxxx 14 5 w b g False\n", - "xxxx 14 6 w g f False\n", - "xxxx 14 7 w g g False\n", - "xxxx 14 8 w g g False\n", - "xxxx 14 9 w f w False\n", - "xxxx 14 10 w g y False\n", - "seq1 14 11 w g w True\n", - "xxxx 14 12 w a y False\n", - "xxxx 14 13 w e a False\n", - "xxxx 14 14 w f e False\n", - "xxxx 14 15 w b z False\n", - "xxxx 14 16 w f x False\n", - "xxxx 14 17 w c x False\n", - "xxxx 14 18 w b f False\n", - "xxxx 14 19 w a y False\n", - "xxxx 14 20 w b b False\n", - "seq1 15 0 y ! w False\n", - "xxxx 15 1 y g g False\n", - "xxxx 15 2 y f u False\n", - "xxxx 15 3 y h g False\n", - "xxxx 15 4 y a g False\n", - "xxxx 15 5 y b f False\n", - "xxxx 15 6 y g g False\n", - "xxxx 15 7 y g g False\n", - "xxxx 15 8 y g w False\n", - "xxxx 15 9 y f y False\n", - "xxxx 15 10 y g w False\n", - "seq1 15 11 y g y True\n", - "seq2 15 12 y a a True\n", - "seq2 15 13 y e e True\n", - "xxxx 15 14 y f z False\n", - "xxxx 15 15 y b x False\n", - "xxxx 15 16 y f x False\n", - "xxxx 15 17 y c f False\n", - "xxxx 15 18 y b y False\n", - "xxxx 15 19 y a b False\n", - "xxxx 15 20 y b x False\n", - "seq1 16 0 z ! g False\n", - "xxxx 16 1 z g u False\n", - "xxxx 16 2 z f g False\n", - "xxxx 16 3 z h g False\n", - "xxxx 16 4 z a f False\n", - "xxxx 16 5 z b g False\n", - "xxxx 16 6 z g g False\n", - "xxxx 16 7 z g w False\n", - "xxxx 16 8 z g y False\n", - "xxxx 16 9 z f w False\n", - "xxxx 16 10 z g y False\n", - "xxxx 16 11 z g a False\n", - "xxxx 16 12 z a e False\n", - "seq1 16 13 z e z True\n", - "xxxx 16 14 z f x False\n", - "xxxx 16 15 z b x False\n", - "xxxx 16 16 z f f False\n", - "xxxx 16 17 z c y False\n", - "xxxx 16 18 z b b False\n", - "xxxx 16 19 z a x False\n", - "xxxx 16 20 z b f False\n", - "seq1 17 0 x ! u False\n", - "xxxx 17 1 x g g False\n", - "xxxx 17 2 x f g False\n", - "xxxx 17 3 x h f False\n", - "xxxx 17 4 x a g False\n", - "xxxx 17 5 x b g False\n", - "xxxx 17 6 x g w False\n", - "xxxx 17 7 x g y False\n", - "xxxx 17 8 x g w False\n", - "xxxx 17 9 x f y False\n", - "xxxx 17 10 x g a False\n", - "xxxx 17 11 x g e False\n", - "xxxx 17 12 x a z False\n", - "seq1 17 13 x e x True\n", - "xxxx 17 14 x f x False\n", - "xxxx 17 15 x b f False\n", - "xxxx 17 16 x f y False\n", - "xxxx 17 17 x c b False\n", - "xxxx 17 18 x b x False\n", - "xxxx 17 19 x a f False\n", - "xxxx 17 20 x b c False\n", - "seq1 18 0 x ! g False\n", - "xxxx 18 1 x g g False\n", - "xxxx 18 2 x f f False\n", - "xxxx 18 3 x h g False\n", - "xxxx 18 4 x a g False\n", - "xxxx 18 5 x b w False\n", - "xxxx 18 6 x g y False\n", - "xxxx 18 7 x g w False\n", - "xxxx 18 8 x g y False\n", - "xxxx 18 9 x f a False\n", - "xxxx 18 10 x g e False\n", - "xxxx 18 11 x g z False\n", - "xxxx 18 12 x a x False\n", - "seq1 18 13 x e x True\n", - "seq2 18 14 x f f True\n", - "xxxx 18 15 x b y False\n", - "xxxx 18 16 x f b False\n", - "xxxx 18 17 x c x False\n", - "xxxx 18 18 x b f False\n", - "xxxx 18 19 x a c False\n", - "xxxx 18 20 x b b False\n", - "seq1 19 0 y ! g False\n", - "xxxx 19 1 y g f False\n", - "xxxx 19 2 y f g False\n", - "xxxx 19 3 y h g False\n", - "xxxx 19 4 y a w False\n", - "xxxx 19 5 y b y False\n", - "xxxx 19 6 y g w False\n", - "xxxx 19 7 y g y False\n", - "xxxx 19 8 y g a False\n", - "xxxx 19 9 y f e False\n", - "xxxx 19 10 y g z False\n", - "xxxx 19 11 y g x False\n", - "xxxx 19 12 y a x False\n", - "xxxx 19 13 y e f False\n", - "seq1 19 14 y f y True\n", - "seq2 19 15 y b b True\n", - "xxxx 19 16 y f x False\n", - "xxxx 19 17 y c f False\n", - "xxxx 19 18 y b c False\n", - "xxxx 19 19 y a b False\n", - "xxxx 19 20 y b a False\n", - "seq1 20 0 x ! f False\n", - "xxxx 20 1 x g g False\n", - "xxxx 20 2 x f g False\n", - "xxxx 20 3 x h w False\n", - "xxxx 20 4 x a y False\n", - "xxxx 20 5 x b w False\n", - "xxxx 20 6 x g y False\n", - "xxxx 20 7 x g a False\n", - "xxxx 20 8 x g e False\n", - "xxxx 20 9 x f z False\n", - "xxxx 20 10 x g x False\n", - "xxxx 20 11 x g x False\n", - "xxxx 20 12 x a f False\n", - "xxxx 20 13 x e y False\n", - "xxxx 20 14 x f b False\n", - "seq1 20 15 x b x True\n", - "seq2 20 16 x f f True\n", - "seq2 20 17 x c c True\n", - "seq2 20 18 x b b True\n", - "seq2 20 19 x a a True\n", - "seq2 20 20 x b b True\n", - "T T . . . . . . . . . . . . . . . . . . .\n", - ". T . . . . . . . . . . . . . . . . . . .\n", - ". T . . . . . . . . . . . . . . . . . . .\n", - ". T . . . . . . . . . . . . . . . . . . .\n", - ". T T . . . . . . . . . . . . . . . . . .\n", - ". . T . . . . . . . . . . . . . . . . . .\n", + "seq2 0 2 ! f f True\n", + "seq2 0 3 ! e z False\n", + "seq2 0 4 ! g e False\n", + "seq2 0 5 ! f y False\n", + "seq2 0 6 ! a g False\n", + "seq2 0 7 ! h f False\n", + "seq2 0 8 ! g a False\n", + "seq2 0 9 ! d z False\n", + "seq2 0 10 ! a v False\n", + "seq2 0 11 ! a y False\n", + "seq2 0 12 ! f u False\n", + "seq2 0 13 ! g z False\n", + "seq2 0 14 ! g h False\n", + "seq2 0 15 ! f v False\n", + "seq2 0 16 ! h g False\n", + "seq2 0 17 ! a d False\n", + "seq2 0 18 ! e u False\n", + "seq2 0 19 ! d z False\n", + "seq2 0 20 ! g a False\n", + "seq1 1 0 z ! g False\n", + "xxxx 1 1 z g f False\n", + "seq1 1 2 z f z True\n", + "seq2 1 3 z e e True\n", + "xxxx 1 4 z g y False\n", + "xxxx 1 5 z f g False\n", + "xxxx 1 6 z a f False\n", + "xxxx 1 7 z h a False\n", + "xxxx 1 8 z g z False\n", + "xxxx 1 9 z d v False\n", + "xxxx 1 10 z a y False\n", + "xxxx 1 11 z a u False\n", + "xxxx 1 12 z f z False\n", + "xxxx 1 13 z g h False\n", + "xxxx 1 14 z g v False\n", + "xxxx 1 15 z f g False\n", + "xxxx 1 16 z h d False\n", + "xxxx 1 17 z a u False\n", + "xxxx 1 18 z e z False\n", + "xxxx 1 19 z d a False\n", + "xxxx 1 20 z g z False\n", + "seq1 2 0 y ! f False\n", + "xxxx 2 1 y g z False\n", + "xxxx 2 2 y f e False\n", + "seq1 2 3 y e y True\n", + "seq2 2 4 y g g True\n", + "seq2 2 5 y f f True\n", + "seq2 2 6 y a a True\n", + "xxxx 2 7 y h z False\n", + "xxxx 2 8 y g v False\n", + "xxxx 2 9 y d y False\n", + "xxxx 2 10 y a u False\n", + "xxxx 2 11 y a z False\n", + "xxxx 2 12 y f h False\n", + "xxxx 2 13 y g v False\n", + "xxxx 2 14 y g g False\n", + "xxxx 2 15 y f d False\n", + "xxxx 2 16 y h u False\n", + "xxxx 2 17 y a z False\n", + "xxxx 2 18 y e a False\n", + "xxxx 2 19 y d z False\n", + "xxxx 2 20 y g y False\n", + "seq1 3 0 z ! z False\n", + "xxxx 3 1 z g e False\n", + "xxxx 3 2 z f y False\n", + "xxxx 3 3 z e g False\n", + "xxxx 3 4 z g f False\n", + "xxxx 3 5 z f a False\n", + "seq1 3 6 z a z True\n", + "xxxx 3 7 z h v False\n", + "xxxx 3 8 z g y False\n", + "xxxx 3 9 z d u False\n", + "xxxx 3 10 z a z False\n", + "xxxx 3 11 z a h False\n", + "xxxx 3 12 z f v False\n", + "xxxx 3 13 z g g False\n", + "xxxx 3 14 z g d False\n", + "xxxx 3 15 z f u False\n", + "xxxx 3 16 z h z False\n", + "xxxx 3 17 z a a False\n", + "xxxx 3 18 z e z False\n", + "xxxx 3 19 z d y False\n", + "xxxx 3 20 z g w False\n", + "seq1 4 0 v ! e False\n", + "xxxx 4 1 v g y False\n", + "xxxx 4 2 v f g False\n", + "xxxx 4 3 v e f False\n", + "xxxx 4 4 v g a False\n", + "xxxx 4 5 v f z False\n", + "seq1 4 6 v a v True\n", + "xxxx 4 7 v h y False\n", + "xxxx 4 8 v g u False\n", + "xxxx 4 9 v d z False\n", + "xxxx 4 10 v a h False\n", + "xxxx 4 11 v a v False\n", + "xxxx 4 12 v f g False\n", + "xxxx 4 13 v g d False\n", + "xxxx 4 14 v g u False\n", + "xxxx 4 15 v f z False\n", + "xxxx 4 16 v h a False\n", + "xxxx 4 17 v a z False\n", + "xxxx 4 18 v e y False\n", + "xxxx 4 19 v d w False\n", + "xxxx 4 20 v g a False\n", + "seq1 5 0 y ! y False\n", + "xxxx 5 1 y g g False\n", + "xxxx 5 2 y f f False\n", + "xxxx 5 3 y e a False\n", + "xxxx 5 4 y g z False\n", + "xxxx 5 5 y f v False\n", + "seq1 5 6 y a y True\n", + "xxxx 5 7 y h u False\n", + "xxxx 5 8 y g z False\n", + "xxxx 5 9 y d h False\n", + "xxxx 5 10 y a v False\n", + "xxxx 5 11 y a g False\n", + "xxxx 5 12 y f d False\n", + "xxxx 5 13 y g u False\n", + "xxxx 5 14 y g z False\n", + "xxxx 5 15 y f a False\n", + "xxxx 5 16 y h z False\n", + "xxxx 5 17 y a y False\n", + "xxxx 5 18 y e w False\n", + "xxxx 5 19 y d a False\n", + "xxxx 5 20 y g f False\n", + "seq1 6 0 u ! g False\n", + "xxxx 6 1 u g f False\n", + "xxxx 6 2 u f a False\n", + "xxxx 6 3 u e z False\n", + "xxxx 6 4 u g v False\n", + "xxxx 6 5 u f y False\n", + "seq1 6 6 u a u True\n", + "xxxx 6 7 u h z False\n", + "xxxx 6 8 u g h False\n", + "xxxx 6 9 u d v False\n", + "xxxx 6 10 u a g False\n", + "xxxx 6 11 u a d False\n", + "xxxx 6 12 u f u False\n", + "xxxx 6 13 u g z False\n", + "xxxx 6 14 u g a False\n", + "xxxx 6 15 u f z False\n", + "xxxx 6 16 u h y False\n", + "xxxx 6 17 u a w False\n", + "xxxx 6 18 u e a False\n", + "xxxx 6 19 u d f False\n", + "xxxx 6 20 u g g False\n", + "seq1 7 0 z ! f False\n", + "xxxx 7 1 z g a False\n", + "xxxx 7 2 z f z False\n", + "xxxx 7 3 z e v False\n", + "xxxx 7 4 z g y False\n", + "xxxx 7 5 z f u False\n", + "seq1 7 6 z a z True\n", + "seq2 7 7 z h h True\n", + "xxxx 7 8 z g v False\n", + "xxxx 7 9 z d g False\n", + "xxxx 7 10 z a d False\n", + "xxxx 7 11 z a u False\n", + "xxxx 7 12 z f z False\n", + "xxxx 7 13 z g a False\n", + "xxxx 7 14 z g z False\n", + "xxxx 7 15 z f y False\n", + "xxxx 7 16 z h w False\n", + "xxxx 7 17 z a a False\n", + "xxxx 7 18 z e f False\n", + "xxxx 7 19 z d g False\n", + "xxxx 7 20 z g g False\n", + "seq1 8 0 v ! a False\n", + "xxxx 8 1 v g z False\n", + "xxxx 8 2 v f v False\n", + "xxxx 8 3 v e y False\n", + "xxxx 8 4 v g u False\n", + "xxxx 8 5 v f z False\n", + "xxxx 8 6 v a h False\n", + "seq1 8 7 v h v True\n", + "seq2 8 8 v g g True\n", + "seq2 8 9 v d d True\n", + "xxxx 8 10 v a u False\n", + "xxxx 8 11 v a z False\n", + "xxxx 8 12 v f a False\n", + "xxxx 8 13 v g z False\n", + "xxxx 8 14 v g y False\n", + "xxxx 8 15 v f w False\n", + "xxxx 8 16 v h a False\n", + "xxxx 8 17 v a f False\n", + "xxxx 8 18 v e g False\n", + "xxxx 8 19 v d g False\n", + "xxxx 8 20 v g f False\n", + "seq1 9 0 u ! z False\n", + "xxxx 9 1 u g v False\n", + "xxxx 9 2 u f y False\n", + "xxxx 9 3 u e u False\n", + "xxxx 9 4 u g z False\n", + "xxxx 9 5 u f h False\n", + "xxxx 9 6 u a v False\n", + "xxxx 9 7 u h g False\n", + "xxxx 9 8 u g d False\n", + "seq1 9 9 u d u True\n", + "xxxx 9 10 u a z False\n", + "xxxx 9 11 u a a False\n", + "xxxx 9 12 u f z False\n", + "xxxx 9 13 u g y False\n", + "xxxx 9 14 u g w False\n", + "xxxx 9 15 u f a False\n", + "xxxx 9 16 u h f False\n", + "xxxx 9 17 u a g False\n", + "xxxx 9 18 u e g False\n", + "xxxx 9 19 u d f False\n", + "xxxx 9 20 u g h False\n", + "seq1 10 0 z ! v False\n", + "xxxx 10 1 z g y False\n", + "xxxx 10 2 z f u False\n", + "xxxx 10 3 z e z False\n", + "xxxx 10 4 z g h False\n", + "xxxx 10 5 z f v False\n", + "xxxx 10 6 z a g False\n", + "xxxx 10 7 z h d False\n", + "xxxx 10 8 z g u False\n", + "seq1 10 9 z d z True\n", + "seq2 10 10 z a a True\n", + "xxxx 10 11 z a z False\n", + "xxxx 10 12 z f y False\n", + "xxxx 10 13 z g w False\n", + "xxxx 10 14 z g a False\n", + "xxxx 10 15 z f f False\n", + "xxxx 10 16 z h g False\n", + "xxxx 10 17 z a g False\n", + "xxxx 10 18 z e f False\n", + "xxxx 10 19 z d h False\n", + "xxxx 10 20 z g x False\n", + "seq1 11 0 z ! y False\n", + "xxxx 11 1 z g u False\n", + "xxxx 11 2 z f z False\n", + "xxxx 11 3 z e h False\n", + "xxxx 11 4 z g v False\n", + "xxxx 11 5 z f g False\n", + "xxxx 11 6 z a d False\n", + "xxxx 11 7 z h u False\n", + "xxxx 11 8 z g z False\n", + "xxxx 11 9 z d a False\n", + "seq1 11 10 z a z True\n", + "xxxx 11 11 z a y False\n", + "xxxx 11 12 z f w False\n", + "xxxx 11 13 z g a False\n", + "xxxx 11 14 z g f False\n", + "xxxx 11 15 z f g False\n", + "xxxx 11 16 z h g False\n", + "xxxx 11 17 z a f False\n", + "xxxx 11 18 z e h False\n", + "xxxx 11 19 z d x False\n", + "xxxx 11 20 z g w False\n", + "seq1 12 0 y ! u False\n", + "xxxx 12 1 y g z False\n", + "xxxx 12 2 y f h False\n", + "xxxx 12 3 y e v False\n", + "xxxx 12 4 y g g False\n", + "xxxx 12 5 y f d False\n", + "xxxx 12 6 y a u False\n", + "xxxx 12 7 y h z False\n", + "xxxx 12 8 y g a False\n", + "xxxx 12 9 y d z False\n", + "seq1 12 10 y a y True\n", + "xxxx 12 11 y a w False\n", + "xxxx 12 12 y f a False\n", + "xxxx 12 13 y g f False\n", + "xxxx 12 14 y g g False\n", + "xxxx 12 15 y f g False\n", + "xxxx 12 16 y h f False\n", + "xxxx 12 17 y a h False\n", + "xxxx 12 18 y e x False\n", + "xxxx 12 19 y d w False\n", + "xxxx 12 20 y g a False\n", + "seq1 13 0 w ! z False\n", + "xxxx 13 1 w g h False\n", + "xxxx 13 2 w f v False\n", + "xxxx 13 3 w e g False\n", + "xxxx 13 4 w g d False\n", + "xxxx 13 5 w f u False\n", + "xxxx 13 6 w a z False\n", + "xxxx 13 7 w h a False\n", + "xxxx 13 8 w g z False\n", + "xxxx 13 9 w d y False\n", + "seq1 13 10 w a w True\n", + "seq2 13 11 w a a True\n", + "seq2 13 12 w f f True\n", + "seq2 13 13 w g g True\n", + "seq2 13 14 w g g True\n", + "seq2 13 15 w f f True\n", + "seq2 13 16 w h h True\n", + "xxxx 13 17 w a x False\n", + "xxxx 13 18 w e w False\n", + "xxxx 13 19 w d a False\n", + "xxxx 13 20 w g e False\n", + "seq1 14 0 x ! h False\n", + "xxxx 14 1 x g v False\n", + "xxxx 14 2 x f g False\n", + "xxxx 14 3 x e d False\n", + "xxxx 14 4 x g u False\n", + "xxxx 14 5 x f z False\n", + "xxxx 14 6 x a a False\n", + "xxxx 14 7 x h z False\n", + "xxxx 14 8 x g y False\n", + "xxxx 14 9 x d w False\n", + "xxxx 14 10 x a a False\n", + "xxxx 14 11 x a f False\n", + "xxxx 14 12 x f g False\n", + "xxxx 14 13 x g g False\n", + "xxxx 14 14 x g f False\n", + "xxxx 14 15 x f h False\n", + "seq1 14 16 x h x True\n", + "xxxx 14 17 x a w False\n", + "xxxx 14 18 x e a False\n", + "xxxx 14 19 x d e False\n", + "xxxx 14 20 x g w False\n", + "seq1 15 0 w ! v False\n", + "xxxx 15 1 w g g False\n", + "xxxx 15 2 w f d False\n", + "xxxx 15 3 w e u False\n", + "xxxx 15 4 w g z False\n", + "xxxx 15 5 w f a False\n", + "xxxx 15 6 w a z False\n", + "xxxx 15 7 w h y False\n", + "xxxx 15 8 w g w False\n", + "xxxx 15 9 w d a False\n", + "xxxx 15 10 w a f False\n", + "xxxx 15 11 w a g False\n", + "xxxx 15 12 w f g False\n", + "xxxx 15 13 w g f False\n", + "xxxx 15 14 w g h False\n", + "xxxx 15 15 w f x False\n", + "seq1 15 16 w h w True\n", + "seq2 15 17 w a a True\n", + "seq2 15 18 w e e True\n", + "xxxx 15 19 w d w False\n", + "xxxx 15 20 w g d False\n", + "seq1 16 0 w ! g False\n", + "xxxx 16 1 w g d False\n", + "xxxx 16 2 w f u False\n", + "xxxx 16 3 w e z False\n", + "xxxx 16 4 w g a False\n", + "xxxx 16 5 w f z False\n", + "xxxx 16 6 w a y False\n", + "xxxx 16 7 w h w False\n", + "xxxx 16 8 w g a False\n", + "xxxx 16 9 w d f False\n", + "xxxx 16 10 w a g False\n", + "xxxx 16 11 w a g False\n", + "xxxx 16 12 w f f False\n", + "xxxx 16 13 w g h False\n", + "xxxx 16 14 w g x False\n", + "xxxx 16 15 w f w False\n", + "xxxx 16 16 w h a False\n", + "xxxx 16 17 w a e False\n", + "seq1 16 18 w e w True\n", + "seq2 16 19 w d d True\n", + "xxxx 16 20 w g x False\n", + "seq1 17 0 x ! d False\n", + "xxxx 17 1 x g u False\n", + "xxxx 17 2 x f z False\n", + "xxxx 17 3 x e a False\n", + "xxxx 17 4 x g z False\n", + "xxxx 17 5 x f y False\n", + "xxxx 17 6 x a w False\n", + "xxxx 17 7 x h a False\n", + "xxxx 17 8 x g f False\n", + "xxxx 17 9 x d g False\n", + "xxxx 17 10 x a g False\n", + "xxxx 17 11 x a f False\n", + "xxxx 17 12 x f h False\n", + "xxxx 17 13 x g x False\n", + "xxxx 17 14 x g w False\n", + "xxxx 17 15 x f a False\n", + "xxxx 17 16 x h e False\n", + "xxxx 17 17 x a w False\n", + "xxxx 17 18 x e d False\n", + "seq1 17 19 x d x True\n", + "xxxx 17 20 x g u False\n", + "seq1 18 0 u ! u False\n", + "xxxx 18 1 u g z False\n", + "xxxx 18 2 u f a False\n", + "xxxx 18 3 u e z False\n", + "xxxx 18 4 u g y False\n", + "xxxx 18 5 u f w False\n", + "xxxx 18 6 u a a False\n", + "xxxx 18 7 u h f False\n", + "xxxx 18 8 u g g False\n", + "xxxx 18 9 u d g False\n", + "xxxx 18 10 u a f False\n", + "xxxx 18 11 u a h False\n", + "xxxx 18 12 u f x False\n", + "xxxx 18 13 u g w False\n", + "xxxx 18 14 u g a False\n", + "xxxx 18 15 u f e False\n", + "xxxx 18 16 u h w False\n", + "xxxx 18 17 u a d False\n", + "xxxx 18 18 u e x False\n", + "seq1 18 19 u d u True\n", + "xxxx 18 20 u g z False\n", + "seq1 19 0 z ! z False\n", + "xxxx 19 1 z g a False\n", + "xxxx 19 2 z f z False\n", + "xxxx 19 3 z e y False\n", + "xxxx 19 4 z g w False\n", + "xxxx 19 5 z f a False\n", + "xxxx 19 6 z a f False\n", + "xxxx 19 7 z h g False\n", + "xxxx 19 8 z g g False\n", + "xxxx 19 9 z d f False\n", + "xxxx 19 10 z a h False\n", + "xxxx 19 11 z a x False\n", + "xxxx 19 12 z f w False\n", + "xxxx 19 13 z g a False\n", + "xxxx 19 14 z g e False\n", + "xxxx 19 15 z f w False\n", + "xxxx 19 16 z h d False\n", + "xxxx 19 17 z a x False\n", + "xxxx 19 18 z e u False\n", + "seq1 19 19 z d z True\n", + "xxxx 19 20 z g x False\n", + "seq1 20 0 x ! a False\n", + "xxxx 20 1 x g z False\n", + "xxxx 20 2 x f y False\n", + "xxxx 20 3 x e w False\n", + "xxxx 20 4 x g a False\n", + "xxxx 20 5 x f f False\n", + "xxxx 20 6 x a g False\n", + "xxxx 20 7 x h g False\n", + "xxxx 20 8 x g f False\n", + "xxxx 20 9 x d h False\n", + "xxxx 20 10 x a x False\n", + "xxxx 20 11 x a w False\n", + "xxxx 20 12 x f a False\n", + "xxxx 20 13 x g e False\n", + "xxxx 20 14 x g w False\n", + "xxxx 20 15 x f d False\n", + "xxxx 20 16 x h x False\n", + "xxxx 20 17 x a u False\n", + "xxxx 20 18 x e z False\n", + "seq1 20 19 x d x True\n", + "seq2 20 20 x g g True\n", + "T T T . . . . . . . . . . . . . . . . . .\n", ". . T T . . . . . . . . . . . . . . . . .\n", - ". . . T T T . . . . . . . . . . . . . . .\n", - ". . . . . T . . . . . . . . . . . . . . .\n", - ". . . . . T . . . . . . . . . . . . . . .\n", - ". . . . . T T . . . . . . . . . . . . . .\n", - ". . . . . . T T T T T T . . . . . . . . .\n", - ". . . . . . . . . . . T . . . . . . . . .\n", - ". . . . . . . . . . . T . . . . . . . . .\n", - ". . . . . . . . . . . T . . . . . . . . .\n", - ". . . . . . . . . . . T T T . . . . . . .\n", - ". . . . . . . . . . . . . T . . . . . . .\n", - ". . . . . . . . . . . . . T . . . . . . .\n", - ". . . . . . . . . . . . . T T . . . . . .\n", - ". . . . . . . . . . . . . . T T . . . . .\n", - ". . . . . . . . . . . . . . . T T T T T T\n" + ". . . T T T T . . . . . . . . . . . . . .\n", + ". . . . . . T . . . . . . . . . . . . . .\n", + ". . . . . . T . . . . . . . . . . . . . .\n", + ". . . . . . T . . . . . . . . . . . . . .\n", + ". . . . . . T . . . . . . . . . . . . . .\n", + ". . . . . . T T . . . . . . . . . . . . .\n", + ". . . . . . . T T T . . . . . . . . . . .\n", + ". . . . . . . . . T . . . . . . . . . . .\n", + ". . . . . . . . . T T . . . . . . . . . .\n", + ". . . . . . . . . . T . . . . . . . . . .\n", + ". . . . . . . . . . T . . . . . . . . . .\n", + ". . . . . . . . . . T T T T T T T . . . .\n", + ". . . . . . . . . . . . . . . . T . . . .\n", + ". . . . . . . . . . . . . . . . T T T . .\n", + ". . . . . . . . . . . . . . . . . . T T .\n", + ". . . . . . . . . . . . . . . . . . . T .\n", + ". . . . . . . . . . . . . . . . . . . T .\n", + ". . . . . . . . . . . . . . . . . . . T .\n", + ". . . . . . . . . . . . . . . . . . . T T\n" ] } ], @@ -1277,18 +1276,16 @@ }, { "cell_type": "code", - "execution_count": 22, - "metadata": { - "collapsed": false - }, + "execution_count": 23, + "metadata": {}, "outputs": [ { "data": { "text/plain": [ - "'gWXUZfZXhUabYUWgUggfggWYWYaeZXXfYbXfcbab'" + "'gfZeYgfaZVYUZhVgdUZaZYWafggfhXWaeWdXUZXg'" ] }, - "execution_count": 22, + "execution_count": 23, "metadata": {}, "output_type": "execute_result" } @@ -1299,37 +1296,35 @@ }, { "cell_type": "code", - "execution_count": 23, - "metadata": { - "collapsed": false - }, + "execution_count": 24, + "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ - "T T . . . . . . . . . . . . . . . . . . .\n", - ". T . . . . . . . . . . . . . . . . . . .\n", - ". T . . . . . . . . . . . . . . . . . . .\n", - ". T . . . . . . . . . . . . . . . . . . .\n", - ". T T . . . . . . . . . . . . . . . . . .\n", - ". . T . . . . . . . . . . . . . . . . . .\n", + "T T T . . . . . . . . . . . . . . . . . .\n", ". . T T . . . . . . . . . . . . . . . . .\n", - ". . . T T T . . . . . . . . . . . . . . .\n", - ". . . . . T . . . . . . . . . . . . . . .\n", - ". . . . . T . . . . . . . . . . . . . . .\n", - ". . . . . T T . . . . . . . . . . . . . .\n", - ". . . . . . T T T T T T . . . . . . . . .\n", - ". . . . . . . . . . . T . . . . . . . . .\n", - ". . . . . . . . . . . T . . . . . . . . .\n", - ". . . . . . . . . . . T . . . . . . . . .\n", - ". . . . . . . . . . . T T T . . . . . . .\n", - ". . . . . . . . . . . . . T . . . . . . .\n", - ". . . . . . . . . . . . . T . . . . . . .\n", - ". . . . . . . . . . . . . T T . . . . . .\n", - ". . . . . . . . . . . . . . T T . . . . .\n", - ". . . . . . . . . . . . . . . T T T T T T\n", - "gWXUZfZXhUabYUWgUggfggWYWYaeZXXfYbXfcbab\n" + ". . . T T T T . . . . . . . . . . . . . .\n", + ". . . . . . T . . . . . . . . . . . . . .\n", + ". . . . . . T . . . . . . . . . . . . . .\n", + ". . . . . . T . . . . . . . . . . . . . .\n", + ". . . . . . T . . . . . . . . . . . . . .\n", + ". . . . . . T T . . . . . . . . . . . . .\n", + ". . . . . . . T T T . . . . . . . . . . .\n", + ". . . . . . . . . T . . . . . . . . . . .\n", + ". . . . . . . . . T T . . . . . . . . . .\n", + ". . . . . . . . . . T . . . . . . . . . .\n", + ". . . . . . . . . . T . . . . . . . . . .\n", + ". . . . . . . . . . T T T T T T T . . . .\n", + ". . . . . . . . . . . . . . . . T . . . .\n", + ". . . . . . . . . . . . . . . . T T T . .\n", + ". . . . . . . . . . . . . . . . . . T T .\n", + ". . . . . . . . . . . . . . . . . . . T .\n", + ". . . . . . . . . . . . . . . . . . . T .\n", + ". . . . . . . . . . . . . . . . . . . T .\n", + ". . . . . . . . . . . . . . . . . . . T T\n", + "gfZeYgfaZVYUZhVgdUZaZYWafggfhXWaeWdXUZXg\n" ] }, { @@ -1338,7 +1333,7 @@ "True" ] }, - "execution_count": 23, + "execution_count": 24, "metadata": {}, "output_type": "execute_result" } @@ -1352,21 +1347,19 @@ }, { "cell_type": "code", - "execution_count": 24, - "metadata": { - "collapsed": false - }, + "execution_count": 25, + "metadata": {}, "outputs": [ { "data": { "text/plain": [ - "('dcgegfedbddhhbgafhbgggcdhgbhbhghbfddbedcacbdhbafbg',\n", - " 'bbbahedbceeebafgghffehgbeacgfcbhccffcacccfacgegcfc',\n", - " 'dcgbbbegfeadhbedddbceheebahfbgaggfhhbgggfcdfhehggbbhbheghbfdadcgbfecbhdccacfcbdhfcabcaccffbgacgegcfc',\n", + "('chcceahdchbdeahgacbfbfebfefacfebhhcdfgfgggfeahaadd',\n", + " 'fbhafageadeedbcdfffaabefeeffaffgebdbchcgfcgggecbgh',\n", + " 'chccfbehaahfdcagheabdedeaehgdabccbfdbfebffeffafacfaebefeebfhhcdfafffgebdgfgggbfchceahgaafdcgdggecbgh',\n", " 100)" ] }, - "execution_count": 24, + "execution_count": 25, "metadata": {}, "output_type": "execute_result" } @@ -1380,59 +1373,57 @@ }, { "cell_type": "code", - "execution_count": 25, - "metadata": { - "collapsed": false - }, + "execution_count": 26, + "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ - "T T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . T T T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . T T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . T . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . T T T T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . T T T . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . T T T . . . . . . . . . . . . . . . . . . . . . . .\n", + "T T T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . T T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . T . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . T T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . T . T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . T T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . T T T T T T . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . T . . T T T T . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . T . T T T . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . T . T . . . . . . . . . . . . . . . . . . . . . .\n", ". . . . . . . . . . . . . . . . . . . . . . . . . . T T T T T . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T T T T . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . T . . T T T . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T T T T . . . . . . . . . . . . .\n", ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . .\n", ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T T . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . T . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T T T . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T T\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T T T T . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T T . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T\n", ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T\n", ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T\n", ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T\n", @@ -1440,7 +1431,7 @@ ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T\n", ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T\n", ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T\n", - "dcgBBBegfeAdHbEddDBCEhEEBAhFbgaGGfhHbgggFcdFhEHgGbBhbhEghbfdAdCGbFeCBHdcCaCFcbdhFCAbCaCCfFbgACGEGCFC\n" + "chccFBeHaAhFdcAGhEAbdeDEaEhgDaBcCbfDbfebfFefFaFAcfAeBEFEEbFhhcdFAfFFGEBDgfgggBfCHCeahGaaFdCGdGGECBGH\n" ] }, { @@ -1449,7 +1440,7 @@ "True" ] }, - "execution_count": 25, + "execution_count": 26, "metadata": {}, "output_type": "execute_result" } @@ -1463,16 +1454,14 @@ }, { "cell_type": "code", - "execution_count": 26, - "metadata": { - "collapsed": false - }, + "execution_count": 27, + "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ - "100 loops, best of 3: 1.77 ms per loop\n" + "1000 loops, best of 3: 1.31 ms per loop\n" ] } ], @@ -1483,10 +1472,8 @@ }, { "cell_type": "code", - "execution_count": 27, - "metadata": { - "collapsed": false - }, + "execution_count": 28, + "metadata": {}, "outputs": [ { "name": "stdout", @@ -1495,55 +1482,55 @@ "T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", "T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", "T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - "T T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + "T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + "T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", ". . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", ". . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", ". . . . . T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . T T T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . T T T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . T . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", ". . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", ". . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . T T T T . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . T T T . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . T T T . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T T . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . T . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . T T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . T T . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . T T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . T T T T T T . . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . T . . . . T T . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . T T T T T . . . . . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . T . T T T T T T T . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . T . . . . . . . . . . . . . . .\n", ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . .\n", ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T T . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T T . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T T T T T T T\n", - "DCGbbbEGFEaDhBedDDbceHeebaHfBGAggFhHBGGGfCDfHehgGbBHBHeGHBFDaDcgBfEcbhDcCAcfCBDHfcaBcAccfFBGacgegcfc\n" + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T T . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T . . . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T . . . . . . .\n", + ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T T T T T T T T\n", + "CHCCfbEhaAHfDCagHeaBdeDEAeHGdAbcCBFdBFEBfFEffaFACFaEbefeeBfHHCDfaffFgebdGFGGGbFchcEAHgAAfDcgDggecbgh\n" ] }, { @@ -1552,7 +1539,7 @@ "True" ] }, - "execution_count": 27, + "execution_count": 28, "metadata": {}, "output_type": "execute_result" } @@ -1566,10 +1553,8 @@ }, { "cell_type": "code", - "execution_count": 28, - "metadata": { - "collapsed": false - }, + "execution_count": 29, + "metadata": {}, "outputs": [ { "data": { @@ -1577,7 +1562,7 @@ "True" ] }, - "execution_count": 28, + "execution_count": 29, "metadata": {}, "output_type": "execute_result" } @@ -1588,18 +1573,16 @@ }, { "cell_type": "code", - "execution_count": 29, - "metadata": { - "collapsed": false - }, + "execution_count": 30, + "metadata": {}, "outputs": [ { "data": { "text/plain": [ - "('aebeedbbfabfbddehbagecgaadbbedaedghchdaghhaghedhbe', False, False)" + "('cbchedabcadedhfafahdaacbhhhedfhgceafghceehaefaebcc', False, False)" ] }, - "execution_count": 29, + "execution_count": 30, "metadata": {}, "output_type": "execute_result" } @@ -1611,18 +1594,17 @@ }, { "cell_type": "code", - "execution_count": 30, - "metadata": { - "collapsed": false - }, + "execution_count": 31, + "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ + "T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", "T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - "T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - "T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + "T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", + "T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", "T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", @@ -1670,8 +1652,7 @@ ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - ". . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .\n", - "DCG\n" + "\n" ] }, { @@ -1680,7 +1661,7 @@ "False" ] }, - "execution_count": 30, + "execution_count": 31, "metadata": {}, "output_type": "execute_result" } @@ -1694,7 +1675,7 @@ }, { "cell_type": "code", - "execution_count": 31, + "execution_count": 32, "metadata": { "collapsed": true }, @@ -1705,81 +1686,61 @@ " return s2 == s3\n", " elif not s2:\n", " return s1 == s3\n", + " elif len(s1) + len(s2) != len(s3):\n", + " return False\n", " else:\n", - " if s1[-1] == s2[-1] and s1[-1] == s3[-1]:\n", - " return is_interleave_recursive(s1[:-1], s2, s3[:-1]) or is_interleave(s1, s2[:-1], s3[:-1])\n", + " if s1[-1] == s3[-1] and s2[-1] == s3[-1]:\n", + " return (is_interleave_recursive(s1[:-1], s2, s3[:-1]) \n", + " or \n", + " is_interleave_recursive(s1, s2[:-1], s3[:-1]) )\n", " elif s1[-1] == s3[-1]:\n", " return is_interleave_recursive(s1[:-1], s2, s3[:-1])\n", " elif s2[-1] == s3[-1]:\n", - " return is_interleave(s1, s2[:-1], s3[:-1])\n", + " return is_interleave_recursive(s1, s2[:-1], s3[:-1])\n", " else:\n", " return False" ] }, { "cell_type": "code", - "execution_count": 32, + "execution_count": 33, "metadata": { "collapsed": true }, "outputs": [], "source": [ - "s1 = make_string(500)\n", - "s2 = make_string(500)\n", - "s3 = make_string(500)\n", - "s12 = interleave(s1, s2)\n", - "s23 = interleave(s2, s3)" - ] - }, - { - "cell_type": "code", - "execution_count": 33, - "metadata": { - "collapsed": false - }, - "outputs": [ - { - "data": { - "text/plain": [ - "True" - ] - }, - "execution_count": 33, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "is_interleave_recursive(s1, s2, s12)" + "import uuid" ] }, { "cell_type": "code", "execution_count": 34, "metadata": { - "collapsed": false + "collapsed": true }, - "outputs": [ - { - "data": { - "text/plain": [ - "False" - ] - }, - "execution_count": 34, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "is_interleave_recursive(s1, s2, s23)" - ] - }, - { - "cell_type": "markdown", - "metadata": {}, + "outputs": [], "source": [ - "## Example" + "def is_subseq_recursive_dot(s1, s2):\n", + " node_id = uuid.uuid4().hex\n", + " node_string = 'n{} [label=\"{}\\\\n{}\"];'.format(node_id, s1, s2)\n", + "# print(s1, s2, node_string)\n", + " if not s1:\n", + " return node_id, ['n{} [label=\"-\\\\n{}\\\\nTrue\"];'.format(node_id, s2)]\n", + " elif len(s1) > len(s2):\n", + " return node_id, ['n{} [label=\"{}\\\\n{}\\\\nFalse\"];'.format(node_id, s1, s2)]\n", + " else:\n", + " if s1[-1] == s2[-1]:\n", + " node1_id, node1_graph = is_subseq_recursive_dot(s1[:-1], s2[:-1])\n", + " node2_id, node2_graph = is_subseq_recursive_dot(s1, s2[:-1])\n", + " return node_id, ([node_string, \n", + " 'n{} -> n{};'.format(node_id, node1_id), \n", + " 'n{} -> n{};'.format(node_id, node2_id)] + \n", + " node1_graph + node2_graph)\n", + " else:\n", + " node1_id, node1_graph = is_subseq_recursive_dot(s1, s2[:-1])\n", + " return node_id, ([node_string, \n", + " 'n{} -> n{};'.format(node_id, node1_id)] + \n", + " node1_graph)" ] }, { @@ -1790,9 +1751,42 @@ }, "outputs": [], "source": [ - "def show_annotated_table(table, bps):\n", - " return '\\n'.join(' '.join('*' if (i, j) == (0, 0) else bps[i, j][2] if table[i, j] else '.' for j in sorted(set([k[1] for k in table])))\n", - " for i in sorted(set([k[0] for k in table])))" + "def is_interleave_recursive_dot(s1, s2, s3):\n", + " \n", + "# print(s1, s2, s3)\n", + " node_id = uuid.uuid4().hex\n", + " node_string = 'n{} [label=\"{}\\\\n{}\\\\n{}\"];'.format(node_id, s1, s2, s3)\n", + "\n", + " if not s1:\n", + " if s2 == s3:\n", + " return node_id, ['n{} [label=\"-\\\\n{}\\\\n{}\\\\nTrue\"];'.format(node_id, s2, s3)]\n", + " else:\n", + " return node_id, ['n{} [label=\"-\\\\n{}\\\\n{}\\\\nFalse\"];'.format(node_id, s2, s3)]\n", + " elif not s2:\n", + " if s1 == s3:\n", + " return node_id, ['n{} [label=\"{}\\\\n-\\\\n{}\\\\nTrue\"];'.format(node_id, s1, s3)]\n", + " else:\n", + " return node_id, ['n{} [label=\"{}\\\\n-\\\\n{}\\\\nFalse\"];'.format(node_id, s1, s3)]\n", + " else:\n", + " if s1[-1] == s2[-1] and s1[-1] == s3[-1]:\n", + " node1_id, node1_graph = is_interleave_recursive_dot(s1[:-1], s2, s3[:-1])\n", + " node2_id, node2_graph = is_interleave_recursive_dot(s1, s2[:-1], s3[:-1])\n", + " return node_id, ([node_string, \n", + " 'n{} -> n{};'.format(node_id, node1_id), \n", + " 'n{} -> n{};'.format(node_id, node2_id)] + \n", + " node1_graph + node2_graph)\n", + " elif s1[-1] == s3[-1]:\n", + " node1_id, node1_graph = is_interleave_recursive_dot(s1[:-1], s2, s3[:-1])\n", + " return node_id, ([node_string, \n", + " 'n{} -> n{};'.format(node_id, node1_id)] + \n", + " node1_graph)\n", + " elif s2[-1] == s3[-1]:\n", + " node1_id, node1_graph = is_interleave_recursive_dot(s1, s2[:-1], s3[:-1])\n", + " return node_id, ([node_string, \n", + " 'n{} -> n{};'.format(node_id, node1_id)] + \n", + " node1_graph)\n", + " else:\n", + " return node_id, ['n{} [label=\"{}\\\\n{}\\\\n{}\\\\nFalse\"];'.format(node_id, s1, s2, s3)]" ] }, { @@ -1803,9 +1797,421 @@ }, "outputs": [], "source": [ - "def show_backtrace_star(bps):\n", - " i = max([0] + [k[0] for k in bps])\n", - " j = max([0] + [k[1] for k in bps])\n", + "s1 = \"aabcc\"\n", + "s2 = \"dbbca\"\n", + "\n", + "s3t = \"aadbbcbcac\"\n", + "s3f = \"aadbbbaccc\"" + ] + }, + { + "cell_type": "code", + "execution_count": 37, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "T . . . . .\n", + "T . . . . .\n", + "T T T T T .\n", + ". T T . T .\n", + ". . T T T T\n", + ". . . T . T\n", + "AAdbbcBCaC\n" + ] + } + ], + "source": [ + "v, bp, t = is_interleave(s1, s2, s3t, return_backpointers=True, return_table=True)\n", + "print(show_table(t))\n", + "print(show_backtrace(bp))" + ] + }, + { + "cell_type": "code", + "execution_count": 38, + "metadata": { + "collapsed": true + }, + "outputs": [], + "source": [ + "def show_table_md(table, s1, s2, s3):\n", + " header = '| |' + '|'.join('{}
{}'.format('
'.join(str(s2[:i])), i) for i in range(len(s2) + 1)) + '|'\n", + " separator = '|:---:' * (len(s2) + 2) + '|'\n", + " rows = []\n", + " columns = sorted(set(k[1] for k in table))\n", + " for r in range(len(s1) + 1):\n", + " row = '|**{}
{}**|'.format(r, s1[:r])\n", + " row += '|'.join('{}
T'.format(s3[:(r+c)]) if table[r, c] else '{}
.'.format(s3[:(r+c)]) for c in columns)\n", + " row += '|'\n", + " rows += [row]\n", + " return '\\n'.join([header] + [separator] + rows)" + ] + }, + { + "cell_type": "code", + "execution_count": 39, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "| |
0|d
1|d
b
2|d
b
b
3|d
b
b
c
4|d
b
b
c
a
5|\n", + "|:---:|:---:|:---:|:---:|:---:|:---:|:---:|\n", + "|**0
**|
T|a
.|aa
.|aad
.|aadb
.|aadbb
.|\n", + "|**1
a**|a
T|aa
.|aad
.|aadb
.|aadbb
.|aadbbc
.|\n", + "|**2
aa**|aa
T|aad
T|aadb
T|aadbb
T|aadbbc
T|aadbbcb
.|\n", + "|**3
aab**|aad
.|aadb
T|aadbb
T|aadbbc
.|aadbbcb
T|aadbbcbc
.|\n", + "|**4
aabc**|aadb
.|aadbb
.|aadbbc
T|aadbbcb
T|aadbbcbc
T|aadbbcbca
T|\n", + "|**5
aabcc**|aadbb
.|aadbbc
.|aadbbcb
.|aadbbcbc
T|aadbbcbca
.|aadbbcbcac
T|\n" + ] + } + ], + "source": [ + "print(show_table_md(t, s1, s2, s3t))" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "| |
0|d
1|d
b
2|d
b
b
3|d
b
b
c
4|d
b
b
c
a
5|\n", + "|:---:|:---:|:---:|:---:|:---:|:---:|:---:|\n", + "|**0
**|
T|a
.|aa
.|aad
.|aadb
.|aadbb
.|\n", + "|**1
a**|a
T|aa
.|aad
.|aadb
.|aadbb
.|aadbbc
.|\n", + "|**2
aa**|aa
T|aad
T|aadb
T|aadbb
T|aadbbc
T|aadbbcb
.|\n", + "|**3
aab**|aad
.|aadb
T|aadbb
T|aadbbc
.|aadbbcb
T|aadbbcbc
.|\n", + "|**4
aabc**|aadb
.|aadbb
.|aadbbc
T|aadbbcb
T|aadbbcbc
T|aadbbcbca
T|\n", + "|**5
aabcc**|aadbb
.|aadbbc
.|aadbbcb
.|aadbbcbc
T|aadbbcbca
.|aadbbcbcac
T|" + ] + }, + { + "cell_type": "code", + "execution_count": 40, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "T T T T\n", + "T . T .\n", + ". . T T\n", + ". . . T\n", + "abACaB\n" + ] + } + ], + "source": [ + "e1 = 'acb'\n", + "e2 = 'aba'\n", + "e3 = 'abacab'\n", + "v, bp, et = is_interleave(e1, e2, e3, return_backpointers=True, return_table=True)\n", + "print(show_table(et))\n", + "print(show_backtrace(bp))" + ] + }, + { + "cell_type": "code", + "execution_count": 41, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "| |
0|a
1|a
b
2|a
b
a
3|\n", + "|:---:|:---:|:---:|:---:|:---:|\n", + "|**0
**|
T|a
T|ab
T|aba
T|\n", + "|**1
a**|a
T|ab
.|aba
T|abac
.|\n", + "|**2
ac**|ab
.|aba
.|abac
T|abaca
T|\n", + "|**3
acb**|aba
.|abac
.|abaca
.|abacab
T|\n" + ] + } + ], + "source": [ + "print(show_table_md(et, e1, e2, e3))" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "| |
0|a
1|a
b
2|a
b
a
3|\n", + "|:---:|:---:|:---:|:---:|:---:|\n", + "|**0
**|
T|a
T|ab
T|aba
T|\n", + "|**1
a**|a
T|ab
.|aba
T|abac
.|\n", + "|**2
ac**|ab
.|aba
.|abac
T|abaca
T|\n", + "|**3
acb**|aba
.|abac
.|abaca
.|abacab
T|" + ] + }, + { + "cell_type": "code", + "execution_count": 42, + "metadata": { + "scrolled": true + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ndf96f65c85de45ba814c3aebe4afed65 [label=\"aabcc\\ndbbca\\naadbbcbcac\"];\n", + "ndf96f65c85de45ba814c3aebe4afed65 -> n0e6e480c9d664ba2af7e041445763b66;\n", + "n0e6e480c9d664ba2af7e041445763b66 [label=\"aabc\\ndbbca\\naadbbcbca\"];\n", + "n0e6e480c9d664ba2af7e041445763b66 -> nc7f25932eaf1431cb98430f8b1644221;\n", + "nc7f25932eaf1431cb98430f8b1644221 [label=\"aabc\\ndbbc\\naadbbcbc\"];\n", + "nc7f25932eaf1431cb98430f8b1644221 -> ncd2942f9e99443619c6ce1d72a10da75;\n", + "nc7f25932eaf1431cb98430f8b1644221 -> n0e76b3b46aba4a8abdbd569a0762170a;\n", + "ncd2942f9e99443619c6ce1d72a10da75 [label=\"aab\\ndbbc\\naadbbcb\"];\n", + "ncd2942f9e99443619c6ce1d72a10da75 -> n4762ffa7e0c6426792438c6f84c9d2f9;\n", + "n4762ffa7e0c6426792438c6f84c9d2f9 [label=\"aa\\ndbbc\\naadbbc\"];\n", + "n4762ffa7e0c6426792438c6f84c9d2f9 -> n9434633af1674b45ae72a987932bcacc;\n", + "n9434633af1674b45ae72a987932bcacc [label=\"aa\\ndbb\\naadbb\"];\n", + "n9434633af1674b45ae72a987932bcacc -> n72dd6ed85e8d43d39b1c6b240f672815;\n", + "n72dd6ed85e8d43d39b1c6b240f672815 [label=\"aa\\ndb\\naadb\"];\n", + "n72dd6ed85e8d43d39b1c6b240f672815 -> nf904e4ea330a48028602500e910001ba;\n", + "nf904e4ea330a48028602500e910001ba [label=\"aa\\nd\\naad\"];\n", + "nf904e4ea330a48028602500e910001ba -> nc2246b72d95748f5984f7a9a922afafa;\n", + "nc2246b72d95748f5984f7a9a922afafa [label=\"aa\\n-\\naa\\nTrue\"];\n", + "n0e76b3b46aba4a8abdbd569a0762170a [label=\"aabc\\ndbb\\naadbbcb\"];\n", + "n0e76b3b46aba4a8abdbd569a0762170a -> nde239312af534c47988db27094dc5e3b;\n", + "nde239312af534c47988db27094dc5e3b [label=\"aabc\\ndb\\naadbbc\"];\n", + "nde239312af534c47988db27094dc5e3b -> n0571e43544db4baea762dd9382a90eab;\n", + "n0571e43544db4baea762dd9382a90eab [label=\"aab\\ndb\\naadbb\"];\n", + "n0571e43544db4baea762dd9382a90eab -> nd24f1944051440d6b94710a3b971c134;\n", + "n0571e43544db4baea762dd9382a90eab -> n671eff7dd1f945a28e7bcd0647d7d40d;\n", + "nd24f1944051440d6b94710a3b971c134 [label=\"aa\\ndb\\naadb\"];\n", + "nd24f1944051440d6b94710a3b971c134 -> n26480b1bcee847adaeb205f2e844a4e5;\n", + "n26480b1bcee847adaeb205f2e844a4e5 [label=\"aa\\nd\\naad\"];\n", + "n26480b1bcee847adaeb205f2e844a4e5 -> n162a36ef08174bafa51dbf89a58965df;\n", + "n162a36ef08174bafa51dbf89a58965df [label=\"aa\\n-\\naa\\nTrue\"];\n", + "n671eff7dd1f945a28e7bcd0647d7d40d [label=\"aab\\nd\\naadb\"];\n", + "n671eff7dd1f945a28e7bcd0647d7d40d -> n8d9c2dc78a9047d4a243d316e87dd782;\n", + "n8d9c2dc78a9047d4a243d316e87dd782 [label=\"aa\\nd\\naad\"];\n", + "n8d9c2dc78a9047d4a243d316e87dd782 -> n6d893e899f6f4f77a30c3be1eeef25d0;\n", + "n6d893e899f6f4f77a30c3be1eeef25d0 [label=\"aa\\n-\\naa\\nTrue\"];\n" + ] + } + ], + "source": [ + "root, graph = is_interleave_recursive_dot(s1, s2, s3t)\n", + "print('\\n'.join(graph))" + ] + }, + { + "cell_type": "code", + "execution_count": 43, + "metadata": { + "scrolled": true + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "n8ab105a57ff44daa8fa8c0bd8275721c [label=\"aaa\\naaa\\naaaaaa\"];\n", + "n8ab105a57ff44daa8fa8c0bd8275721c -> ndd3ec050e4d441ba9f5eca4140804aa2;\n", + "n8ab105a57ff44daa8fa8c0bd8275721c -> n5fe9af06410d4e3796f3e5b09724befb;\n", + "ndd3ec050e4d441ba9f5eca4140804aa2 [label=\"aa\\naaa\\naaaaa\"];\n", + "ndd3ec050e4d441ba9f5eca4140804aa2 -> n4da003b54dd94728a1aa1890f1a9250a;\n", + "ndd3ec050e4d441ba9f5eca4140804aa2 -> ncb2a3fd92dc6414a99dc115990760e7c;\n", + "n4da003b54dd94728a1aa1890f1a9250a [label=\"a\\naaa\\naaaa\"];\n", + "n4da003b54dd94728a1aa1890f1a9250a -> n699e6ec8bba74ec394a68d5c2d306c30;\n", + "n4da003b54dd94728a1aa1890f1a9250a -> n71376b3b5e614617ba68dccf8d9677cc;\n", + "n699e6ec8bba74ec394a68d5c2d306c30 [label=\"-\\naaa\\naaa\\nTrue\"];\n", + "n71376b3b5e614617ba68dccf8d9677cc [label=\"a\\naa\\naaa\"];\n", + "n71376b3b5e614617ba68dccf8d9677cc -> nb876b970b38f4ba2937a69ba491f308c;\n", + "n71376b3b5e614617ba68dccf8d9677cc -> nfb2ebec95c5c46c6b160c511031f5417;\n", + "nb876b970b38f4ba2937a69ba491f308c [label=\"-\\naa\\naa\\nTrue\"];\n", + "nfb2ebec95c5c46c6b160c511031f5417 [label=\"a\\na\\naa\"];\n", + "nfb2ebec95c5c46c6b160c511031f5417 -> ndcf30cbbd8f646adb30c01e8fbc8aaaf;\n", + "nfb2ebec95c5c46c6b160c511031f5417 -> n9bb6593bab3c47e59f83df2767b67a3a;\n", + "ndcf30cbbd8f646adb30c01e8fbc8aaaf [label=\"-\\na\\na\\nTrue\"];\n", + "n9bb6593bab3c47e59f83df2767b67a3a [label=\"a\\n-\\na\\nTrue\"];\n", + "ncb2a3fd92dc6414a99dc115990760e7c [label=\"aa\\naa\\naaaa\"];\n", + "ncb2a3fd92dc6414a99dc115990760e7c -> n937d754714994223bc97015534e1806e;\n", + "ncb2a3fd92dc6414a99dc115990760e7c -> n553eac2d6c4542448a5c82b781e963b1;\n", + "n937d754714994223bc97015534e1806e [label=\"a\\naa\\naaa\"];\n", + "n937d754714994223bc97015534e1806e -> n08a6688eb7df48f8834787728a0e36a2;\n", + "n937d754714994223bc97015534e1806e -> n063d395576474c5b82d810b2b70e7e3c;\n", + "n08a6688eb7df48f8834787728a0e36a2 [label=\"-\\naa\\naa\\nTrue\"];\n", + "n063d395576474c5b82d810b2b70e7e3c [label=\"a\\na\\naa\"];\n", + "n063d395576474c5b82d810b2b70e7e3c -> n04b9f6aea46c458da227558ab02a0b4c;\n", + "n063d395576474c5b82d810b2b70e7e3c -> nc067208a5ab64f8c9904d58b738b81e4;\n", + "n04b9f6aea46c458da227558ab02a0b4c [label=\"-\\na\\na\\nTrue\"];\n", + "nc067208a5ab64f8c9904d58b738b81e4 [label=\"a\\n-\\na\\nTrue\"];\n", + "n553eac2d6c4542448a5c82b781e963b1 [label=\"aa\\na\\naaa\"];\n", + "n553eac2d6c4542448a5c82b781e963b1 -> n5d50905c46ce4dc8bcb59fb62984fa54;\n", + "n553eac2d6c4542448a5c82b781e963b1 -> n6768e9ad78804e65b1bde9cb655f2a60;\n", + "n5d50905c46ce4dc8bcb59fb62984fa54 [label=\"a\\na\\naa\"];\n", + "n5d50905c46ce4dc8bcb59fb62984fa54 -> n22bc48dd2aa84e79a387252cc28f3a92;\n", + "n5d50905c46ce4dc8bcb59fb62984fa54 -> n853ef88a20ee48a4bccf390498c96f5d;\n", + "n22bc48dd2aa84e79a387252cc28f3a92 [label=\"-\\na\\na\\nTrue\"];\n", + "n853ef88a20ee48a4bccf390498c96f5d [label=\"a\\n-\\na\\nTrue\"];\n", + "n6768e9ad78804e65b1bde9cb655f2a60 [label=\"aa\\n-\\naa\\nTrue\"];\n", + "n5fe9af06410d4e3796f3e5b09724befb [label=\"aaa\\naa\\naaaaa\"];\n", + "n5fe9af06410d4e3796f3e5b09724befb -> ne6b19fc7e02b4981a1edc20c7fe0cce0;\n", + "n5fe9af06410d4e3796f3e5b09724befb -> ne0c07d6d54f045a5b4bf9eb10bd8d810;\n", + "ne6b19fc7e02b4981a1edc20c7fe0cce0 [label=\"aa\\naa\\naaaa\"];\n", + "ne6b19fc7e02b4981a1edc20c7fe0cce0 -> n9d2cfd4e9cf2473bbd05a8a7e2a96714;\n", + "ne6b19fc7e02b4981a1edc20c7fe0cce0 -> n3d4e61bc032c4f8387c269d8ac49cc3f;\n", + "n9d2cfd4e9cf2473bbd05a8a7e2a96714 [label=\"a\\naa\\naaa\"];\n", + "n9d2cfd4e9cf2473bbd05a8a7e2a96714 -> n214f88e71d504eaba78b46c5a5bbe31d;\n", + "n9d2cfd4e9cf2473bbd05a8a7e2a96714 -> n2890559b11cb49c9aa083a76a7b68ce4;\n", + "n214f88e71d504eaba78b46c5a5bbe31d [label=\"-\\naa\\naa\\nTrue\"];\n", + "n2890559b11cb49c9aa083a76a7b68ce4 [label=\"a\\na\\naa\"];\n", + "n2890559b11cb49c9aa083a76a7b68ce4 -> n5d37f312b10341d09e2faa4fb4f40e3c;\n", + "n2890559b11cb49c9aa083a76a7b68ce4 -> nd73fc499c4214ddbbe7155f97c9ff394;\n", + "n5d37f312b10341d09e2faa4fb4f40e3c [label=\"-\\na\\na\\nTrue\"];\n", + "nd73fc499c4214ddbbe7155f97c9ff394 [label=\"a\\n-\\na\\nTrue\"];\n", + "n3d4e61bc032c4f8387c269d8ac49cc3f [label=\"aa\\na\\naaa\"];\n", + "n3d4e61bc032c4f8387c269d8ac49cc3f -> nfac20fc8bb7441f891ac0380259f3b76;\n", + "n3d4e61bc032c4f8387c269d8ac49cc3f -> n9d9c86dc313f48b69d9c2693ee32e7ab;\n", + "nfac20fc8bb7441f891ac0380259f3b76 [label=\"a\\na\\naa\"];\n", + "nfac20fc8bb7441f891ac0380259f3b76 -> n14489559bae24e99b2d816716ceef683;\n", + "nfac20fc8bb7441f891ac0380259f3b76 -> n44c425cd261c4c19971a47901723f942;\n", + "n14489559bae24e99b2d816716ceef683 [label=\"-\\na\\na\\nTrue\"];\n", + "n44c425cd261c4c19971a47901723f942 [label=\"a\\n-\\na\\nTrue\"];\n", + "n9d9c86dc313f48b69d9c2693ee32e7ab [label=\"aa\\n-\\naa\\nTrue\"];\n", + "ne0c07d6d54f045a5b4bf9eb10bd8d810 [label=\"aaa\\na\\naaaa\"];\n", + "ne0c07d6d54f045a5b4bf9eb10bd8d810 -> n8d8289489db44271b99f22c572668eaa;\n", + "ne0c07d6d54f045a5b4bf9eb10bd8d810 -> n4eda0dd1e0e34c8c9a81beba5c70fe5f;\n", + "n8d8289489db44271b99f22c572668eaa [label=\"aa\\na\\naaa\"];\n", + "n8d8289489db44271b99f22c572668eaa -> n156514e9dbcb44a8a6b4d96f1ec3e48f;\n", + "n8d8289489db44271b99f22c572668eaa -> n3ba7c5a0cc3b405aa6ca7899ee85a518;\n", + "n156514e9dbcb44a8a6b4d96f1ec3e48f [label=\"a\\na\\naa\"];\n", + "n156514e9dbcb44a8a6b4d96f1ec3e48f -> n3b99ff94eb914661bafe9ba4c0c997e2;\n", + "n156514e9dbcb44a8a6b4d96f1ec3e48f -> n91eac98d4ed74a1f99fd48ca60111d2c;\n", + "n3b99ff94eb914661bafe9ba4c0c997e2 [label=\"-\\na\\na\\nTrue\"];\n", + "n91eac98d4ed74a1f99fd48ca60111d2c [label=\"a\\n-\\na\\nTrue\"];\n", + "n3ba7c5a0cc3b405aa6ca7899ee85a518 [label=\"aa\\n-\\naa\\nTrue\"];\n", + "n4eda0dd1e0e34c8c9a81beba5c70fe5f [label=\"aaa\\n-\\naaa\\nTrue\"];\n" + ] + } + ], + "source": [ + "root, graph = is_interleave_recursive_dot('aaa', 'aaa', 'aaaaaa')\n", + "print('\\n'.join(graph))" + ] + }, + { + "cell_type": "code", + "execution_count": 44, + "metadata": { + "scrolled": true + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "n5d63e71661ed4a8ead31b5c5f9c1949b [label=\"acb\\naba\\nabacab\"];\n", + "n5d63e71661ed4a8ead31b5c5f9c1949b -> n11bd1802979b4332bdf9cf6cc3b2a51c;\n", + "n11bd1802979b4332bdf9cf6cc3b2a51c [label=\"ac\\naba\\nabaca\"];\n", + "n11bd1802979b4332bdf9cf6cc3b2a51c -> n8a082af1ba074b84b7410b97554be94f;\n", + "n8a082af1ba074b84b7410b97554be94f [label=\"ac\\nab\\nabac\"];\n", + "n8a082af1ba074b84b7410b97554be94f -> n6ec78858d88046c8b8531a63f38825b3;\n", + "n6ec78858d88046c8b8531a63f38825b3 [label=\"a\\nab\\naba\"];\n", + "n6ec78858d88046c8b8531a63f38825b3 -> na563514a3f194725be7160850c3c8369;\n", + "na563514a3f194725be7160850c3c8369 [label=\"-\\nab\\nab\\nTrue\"];\n" + ] + } + ], + "source": [ + "root, graph = is_interleave_recursive_dot(e1, e2, e3)\n", + "print('\\n'.join(graph))" + ] + }, + { + "cell_type": "code", + "execution_count": 45, + "metadata": { + "collapsed": true + }, + "outputs": [], + "source": [ + "s1 = make_string(500)\n", + "s2 = make_string(500)\n", + "s3 = make_string(500)\n", + "s12 = interleave(s1, s2)\n", + "s23 = interleave(s2, s3)" + ] + }, + { + "cell_type": "code", + "execution_count": 48, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "True" + ] + }, + "execution_count": 48, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "is_interleave_recursive(s1, s2, s12)" + ] + }, + { + "cell_type": "code", + "execution_count": 49, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "False" + ] + }, + "execution_count": 49, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "is_interleave_recursive(s1, s2, s23)" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Example" + ] + }, + { + "cell_type": "code", + "execution_count": 50, + "metadata": { + "collapsed": true + }, + "outputs": [], + "source": [ + "def show_annotated_table(table, bps):\n", + " return '\\n'.join(' '.join('*' if (i, j) == (0, 0) else bps[i, j][2] if table[i, j] else '.' for j in sorted(set([k[1] for k in table])))\n", + " for i in sorted(set([k[0] for k in table])))" + ] + }, + { + "cell_type": "code", + "execution_count": 51, + "metadata": { + "collapsed": true + }, + "outputs": [], + "source": [ + "def show_backtrace_star(bps):\n", + " i = max([0] + [k[0] for k in bps])\n", + " j = max([0] + [k[1] for k in bps])\n", " chars = ''\n", " stars = ''\n", " if (i, j) in bps:\n", @@ -1823,18 +2229,29 @@ }, { "cell_type": "code", - "execution_count": 37, - "metadata": { - "collapsed": false - }, + "execution_count": 52, + "metadata": {}, "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "0: ddadbdcbdc\n", + "1: bbcbbabdab\n", + "2: dcddddbbdb\n", + "3: cccbbbcbabadbddcabda\n", + "4: ddcdddadddbbbddbcbdc\n", + "5: dcccdddcbdbadbdbdcda\n", + "6: ddadbbcbbbdacbbdcdab\n" + ] + }, { "data": { "text/plain": [ - "('badbabcddb', 'dcaacccbaa', 'bdacaacccdbbabacdadb', 20)" + "['ddadbbcbbbdacbbdcdab']" ] }, - "execution_count": 37, + "execution_count": 52, "metadata": {}, "output_type": "execute_result" } @@ -1843,35 +2260,39 @@ "s1 = make_string(10, alphabet='abcd')\n", "s2 = make_string(10, alphabet='abcd')\n", "s3 = make_string(10, alphabet='abcd')\n", + "s4 = make_string(10, alphabet='abcd')\n", "il = interleave(s1, s2)\n", - "s1, s2, il, len(il)" + "bs = [s3, il, interleave(s3, s4), interleave(s2, s4), interleave(s1, s3)]\n", + "random.shuffle(bs)\n", + "bs = [s1, s2] + bs\n", + "tg = [l for l in bs if is_interleave(s1, s2, l)]\n", + "print('\\n'.join(['{}: {}'.format(i, s) for i, s in enumerate(bs)]))\n", + "tg" ] }, { "cell_type": "code", - "execution_count": 38, - "metadata": { - "collapsed": false - }, + "execution_count": 53, + "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "* . . . . . . . . . .\n", - "b d . . . . . . . . .\n", - ". a c a a c c c . . .\n", - ". . . . . . . d b . .\n", - ". . . . . . . b b a .\n", - ". . . . . . . . a . .\n", - ". . . . . . . . b a .\n", - ". . . . . . . . . c .\n", - ". . . . . . . . . d a\n", - ". . . . . . . . . . d\n", - ". . . . . . . . . . b\n", - "BdAcaacccDbBABaCDaDB\n", - "bdacaacccdbbabacdadb\n", - "* * * *** ** **\n" + "d . . . . . . . . . .\n", + "d . . . . . . . . . .\n", + "a . . . . . . . . . .\n", + "d b b c b b . . . . .\n", + "b b . b b b . . . . .\n", + ". . . . . d a . . . .\n", + ". . . . . . c b . . .\n", + ". . . . . . b b d . .\n", + ". . . . . . . d . . .\n", + ". . . . . . . c d a b\n", + "DDADbbcbbBDaCbBDCdab\n", + "ddadbbcbbbdacbbdcdab\n", + "**** ** * *** \n" ] }, { @@ -1880,7 +2301,7 @@ "True" ] }, - "execution_count": 38, + "execution_count": 53, "metadata": {}, "output_type": "execute_result" } @@ -1895,29 +2316,58 @@ }, { "cell_type": "code", - "execution_count": 39, - "metadata": { - "collapsed": false - }, + "execution_count": 54, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ddcdddadddbbbddbcbdc\n", + " * ** * * * ****\n" + ] + }, + { + "data": { + "text/plain": [ + "4" + ] + }, + "execution_count": 54, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "ind = [i for i, b in enumerate(bs) if is_interleave(s1, s3, b)][0]\n", + "v, bp = is_interleave(s1, s3, bs[ind], return_backpointers=True)\n", + "print(show_backtrace_star(bp))\n", + "ind" + ] + }, + { + "cell_type": "code", + "execution_count": 55, + "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ - "* b . . . . . . . . .\n", - ". d a . . . . . . . .\n", - ". . c . . . . . . . .\n", - ". . a . . . . . . . .\n", - ". . a . . . . . . . .\n", - ". . c . . . . . . . .\n", - ". . c . . . . . . . .\n", - ". . c d b . . . . . .\n", - ". . . b b a b . . . .\n", - ". . . . a . a c d . .\n", - ". . . . . . . . a d b\n", - "bDaCAACCCdbBabAcdAdb\n", - "bdacaacccdbbabacdadb\n", - " * ****** * * * \n" + "* d d a d b . . . . .\n", + ". . . . b b . . . . .\n", + ". . . . b . . . . . .\n", + ". . . . c b . . . . .\n", + ". . . . b b . . . . .\n", + ". . . . b b d . . . .\n", + ". . . . . . a c b . .\n", + ". . . . . . . b b d c\n", + ". . . . . . . . d . d\n", + ". . . . . . . . . . a\n", + ". . . . . . . . . . b\n", + "ddadBBCbBBdAcbBdcDAB\n", + "ddadbbcbbbdacbbdcdab\n", + " *** ** * * ***\n" ] }, { @@ -1926,7 +2376,7 @@ "True" ] }, - "execution_count": 39, + "execution_count": 55, "metadata": {}, "output_type": "execute_result" } @@ -1941,29 +2391,26 @@ }, { "cell_type": "code", - "execution_count": 40, - "metadata": { - "collapsed": false - }, + "execution_count": 56, + "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ - "* . . . . . . . . . .\n", + "* d . . . . . . . . .\n", + "d d . . . . . . . . .\n", + "d . . . . . . . . . .\n", + "a d . . . . . . . . .\n", + "d . . . . . . . . . .\n", "b . . . . . . . . . .\n", ". . . . . . . . . . .\n", ". . . . . . . . . . .\n", ". . . . . . . . . . .\n", ". . . . . . . . . . .\n", ". . . . . . . . . . .\n", - ". . . . . . . . . . .\n", - ". . . . . . . . . . .\n", - ". . . . . . . . . . .\n", - ". . . . . . . . . . .\n", - "B\n", - "b\n", - "*\n" + "\n", + "\n" ] }, { @@ -1972,7 +2419,7 @@ "False" ] }, - "execution_count": 40, + "execution_count": 56, "metadata": {}, "output_type": "execute_result" } @@ -1987,16 +2434,14 @@ }, { "cell_type": "code", - "execution_count": 41, - "metadata": { - "collapsed": false - }, + "execution_count": 57, + "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ - "* . . . . . . . . . .\n", + "* d . . . . . . . . .\n", ". . . . . . . . . . .\n", ". . . . . . . . . . .\n", ". . . . . . . . . . .\n", @@ -2007,8 +2452,9 @@ ". . . . . . . . . . .\n", ". . . . . . . . . . .\n", ". . . . . . . . . . .\n", - "\n", - "\n" + "d\n", + "d\n", + " \n" ] }, { @@ -2017,7 +2463,7 @@ "False" ] }, - "execution_count": 41, + "execution_count": 57, "metadata": {}, "output_type": "execute_result" } @@ -2036,14 +2482,26 @@ "collapsed": true }, "source": [ - "# Make puzzle data" + "# Make puzzle data\n", + "\n", + "## Note to self\n", + "Include some distractors in the test set, such that:\n", + "* subsequence(my_bill, distractor) is true\n", + "* subsequence(friend_bill, distractor) is true\n", + "* interleave(my_bill, friend_bill, distractor) is false\n", + "\n", + "(i.e. characters are shared between my_bill and friend_bill)\n", + "\n", + "Students are taking a greedy approach to subsequence, and saying the interleave is true if both bills are subsequences of the distractor.\n", + "\n", + "i.e. \"aaa\" and \"aab\" are both subsequences of \"aaabbb\", but cannot be interleaved to form \"aaabbb\".\n" ] }, { "cell_type": "code", "execution_count": 58, "metadata": { - "collapsed": false + "collapsed": true }, "outputs": [], "source": [ @@ -2052,7 +2510,7 @@ "other_bills = [make_string(200) for _ in range(98)]\n", "\n", "target_interleaved = interleave(my_bill, friend_bill)\n", - "mine_interleaved = [interleave(my_bill, o) for o in random.sample(other_bills, 24)]\n", + "mine_interleaved = [interleave(my_bill, o) for o in random.sample(other_bills, 21)]\n", "friend_interleaved = [interleave(friend_bill, o) for o in random.sample(other_bills, 13)]\n", "other_interleaved = []\n", "for _ in range(103):\n", @@ -2064,7 +2522,7 @@ "cell_type": "code", "execution_count": 59, "metadata": { - "collapsed": false + "collapsed": true }, "outputs": [], "source": [ @@ -2074,16 +2532,14 @@ { "cell_type": "code", "execution_count": 60, - "metadata": { - "collapsed": false - }, + "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ - "CPU times: user 4.55 s, sys: 4 ms, total: 4.56 s\n", - "Wall time: 4.56 s\n" + "CPU times: user 3.2 s, sys: 96 ms, total: 3.3 s\n", + "Wall time: 3.3 s\n" ] }, { @@ -2104,16 +2560,14 @@ { "cell_type": "code", "execution_count": 61, - "metadata": { - "collapsed": false - }, + "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ - "CPU times: user 1.03 s, sys: 4 ms, total: 1.04 s\n", - "Wall time: 1.03 s\n" + "CPU times: user 0 ns, sys: 0 ns, total: 0 ns\n", + "Wall time: 570 µs\n" ] }, { @@ -2143,9 +2597,211 @@ "random.shuffle(bill_set)\n", "bill_set = [my_bill, friend_bill] + bill_set\n", "\n", - "with open('09-bills.txt', 'w') as f:\n", - " for i, b in enumerate(bill_set):\n", - " f.write('{}: {}\\n'.format(i, b))\n" + "# with open('09-bills.txt', 'w') as f:\n", + "# for i, b in enumerate(bill_set):\n", + "# f.write('{}: {}\\n'.format(i, b))" + ] + }, + { + "cell_type": "code", + "execution_count": 63, + "metadata": { + "collapsed": true + }, + "outputs": [], + "source": [ + "def is_subseq_greedy(s1, s2):\n", + " i = j = 0\n", + " while i < len(s1) and j < len(s2):\n", + " if s1[i] == s2[j]:\n", + " i += 1\n", + " j += 1\n", + " return i == len(s1)" + ] + }, + { + "cell_type": "code", + "execution_count": 64, + "metadata": { + "collapsed": true + }, + "outputs": [], + "source": [ + "def subseq_partition(s1, s2):\n", + " i = j = 0\n", + " remainder = ''\n", + " while i < len(s1) and j < len(s2):\n", + " if s1[i] == s2[j]:\n", + " i += 1\n", + " else:\n", + " remainder += s2[j]\n", + " j += 1\n", + " return i == len(s1), remainder" + ] + }, + { + "cell_type": "code", + "execution_count": 65, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "(40, 40, 20, 20)" + ] + }, + "execution_count": 65, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "common = make_string(10)\n", + "padding = make_string(10)\n", + "middle = interleave(common, padding)\n", + "\n", + "pre1 = make_string(5)\n", + "suf1 = make_string(5)\n", + "\n", + "pre2 = make_string(5)\n", + "suf2 = make_string(5)\n", + "\n", + "pre = interleave(pre1, pre2)\n", + "suf = interleave(suf1, suf2)\n", + "\n", + "distractor = pre + middle + suf\n", + "\n", + "sub1 = pre1 + common + suf1\n", + "sub2 = pre2 + common + suf2\n", + "\n", + "valid = interleave(sub1, sub2)\n", + "\n", + "len(distractor), len(valid), len(sub1), len(sub2)" + ] + }, + { + "cell_type": "code", + "execution_count": 66, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "(True, True)" + ] + }, + "execution_count": 66, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "is_subseq_greedy(sub1, distractor), is_subseq_greedy(sub2, distractor)" + ] + }, + { + "cell_type": "code", + "execution_count": 67, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "(True, True)" + ] + }, + "execution_count": 67, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "is_subseq_greedy(sub1, valid), is_subseq_greedy(sub2, valid)" + ] + }, + { + "cell_type": "code", + "execution_count": 68, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "(False, True)" + ] + }, + "execution_count": 68, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "is_interleave(sub1, sub2, distractor), is_interleave(sub1, sub2, valid)" + ] + }, + { + "cell_type": "code", + "execution_count": 69, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "('hbgbfhdaghfbcagbhhgh',\n", + " 'eccfdhdaghfbcaggbaae',\n", + " 'ehccbfgbdfhfefdbagefagehfgbcaggbbhahgaeh',\n", + " 'hecbgbfhdagchffbdhcagdbhaghhfgbchaggbaae')" + ] + }, + "execution_count": 69, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "sub1, sub2, distractor, valid" + ] + }, + { + "cell_type": "code", + "execution_count": 70, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "False" + ] + }, + "execution_count": 70, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "a, b = subseq_partition(sub1, distractor)\n", + "b == sub2" + ] + }, + { + "cell_type": "code", + "execution_count": 71, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "('eccfdhdaghfbc', 'eccfdhdaghfbcaggbaae')" + ] + }, + "execution_count": 71, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "a, b = subseq_partition(sub1, valid)\n", + "b, sub2" ] }, { @@ -2174,7 +2830,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.5.2" + "version": "3.5.2+" } }, "nbformat": 4,