Tweaked to have separate script for boilerplate
authorNeil Smith <neil.git@njae.me.uk>
Thu, 22 Feb 2018 20:54:39 +0000 (20:54 +0000)
committerNeil Smith <neil.git@njae.me.uk>
Thu, 22 Feb 2018 20:54:39 +0000 (20:54 +0000)
plot_extensions.R [new file with mode: 0644]
section5.1.ipynb
section5.1solutions.ipynb

diff --git a/plot_extensions.R b/plot_extensions.R
new file mode 100644 (file)
index 0000000..b72ddb0
--- /dev/null
@@ -0,0 +1,60 @@
+# Multiple plot function
+#
+# ggplot objects can be passed in ..., or to plotlist (as a list of ggplot objects)
+# - cols:   Number of columns in layout
+# - layout: A matrix specifying the layout. If present, 'cols' is ignored.
+#
+# If the layout is something like matrix(c(1,2,3,3), nrow=2, byrow=TRUE),
+# then plot 1 will go in the upper left, 2 will go in the upper right, and
+# 3 will go all the way across the bottom.
+#
+multiplot <- function(..., plotlist=NULL, file, cols=1, layout=NULL) {
+  library(grid)
+
+  # Make a list from the ... arguments and plotlist
+  plots <- c(list(...), plotlist)
+
+  numPlots = length(plots)
+
+  # If layout is NULL, then use 'cols' to determine layout
+  if (is.null(layout)) {
+    # Make the panel
+    # ncol: Number of columns of plots
+    # nrow: Number of rows needed, calculated from # of cols
+    layout <- matrix(seq(1, cols * ceiling(numPlots/cols)),
+                    ncol = cols, nrow = ceiling(numPlots/cols))
+  }
+
+ if (numPlots==1) {
+    print(plots[[1]])
+
+  } else {
+    # Set up the page
+    grid.newpage()
+    pushViewport(viewport(layout = grid.layout(nrow(layout), ncol(layout))))
+
+    # Make each plot, in the correct location
+    for (i in 1:numPlots) {
+      # Get the i,j matrix positions of the regions that contain this subplot
+      matchidx <- as.data.frame(which(layout == i, arr.ind = TRUE))
+
+      print(plots[[i]], vp = viewport(layout.pos.row = matchidx$row,
+                                      layout.pos.col = matchidx$col))
+    }
+  }
+}
+
+# From https://sejohnston.com/2012/08/09/a-quick-and-easy-function-to-plot-lm-results-in-r/
+ggplotRegression <- function (fit) {
+
+require(ggplot2)
+
+ggplot(fit$model, aes_string(x = names(fit$model)[2], y = names(fit$model)[1])) + 
+    geom_point() +
+    stat_smooth(method = "lm", col = "red") +
+    labs(title = paste("Adj R2 = ",signif(summary(fit)$adj.r.squared, 5),
+                     "Intercept =",signif(fit$coef[[1]],5 ),
+                     " Slope =",signif(fit$coef[[2]], 5),
+                     " P =",signif(summary(fit)$coef[2,4], 5))) + 
+    theme(plot.title = element_text(size=12))
+}
index 9a234b9f6e3118c3cedaa586bc962d2cc826a609..3539ef0c4d8c861ad764538a19e64fa521f06783 100644 (file)
   },
   {
    "cell_type": "code",
-   "execution_count": 25,
+   "execution_count": null,
    "metadata": {
     "init_cell": true
    },
    "outputs": [],
    "source": [
     "library(tidyverse)\n",
-    "# library(cowplot)\n",
     "library(repr)\n",
     "library(ggfortify)\n",
     "\n",
   },
   {
    "cell_type": "code",
-   "execution_count": 26,
-   "metadata": {
-    "init_cell": true
-   },
-   "outputs": [],
-   "source": [
-    "# Multiple plot function\n",
-    "#\n",
-    "# ggplot objects can be passed in ..., or to plotlist (as a list of ggplot objects)\n",
-    "# - cols:   Number of columns in layout\n",
-    "# - layout: A matrix specifying the layout. If present, 'cols' is ignored.\n",
-    "#\n",
-    "# If the layout is something like matrix(c(1,2,3,3), nrow=2, byrow=TRUE),\n",
-    "# then plot 1 will go in the upper left, 2 will go in the upper right, and\n",
-    "# 3 will go all the way across the bottom.\n",
-    "#\n",
-    "multiplot <- function(..., plotlist=NULL, file, cols=1, layout=NULL) {\n",
-    "  library(grid)\n",
-    "\n",
-    "  # Make a list from the ... arguments and plotlist\n",
-    "  plots <- c(list(...), plotlist)\n",
-    "\n",
-    "  numPlots = length(plots)\n",
-    "\n",
-    "  # If layout is NULL, then use 'cols' to determine layout\n",
-    "  if (is.null(layout)) {\n",
-    "    # Make the panel\n",
-    "    # ncol: Number of columns of plots\n",
-    "    # nrow: Number of rows needed, calculated from # of cols\n",
-    "    layout <- matrix(seq(1, cols * ceiling(numPlots/cols)),\n",
-    "                    ncol = cols, nrow = ceiling(numPlots/cols))\n",
-    "  }\n",
-    "\n",
-    " if (numPlots==1) {\n",
-    "    print(plots[[1]])\n",
-    "\n",
-    "  } else {\n",
-    "    # Set up the page\n",
-    "    grid.newpage()\n",
-    "    pushViewport(viewport(layout = grid.layout(nrow(layout), ncol(layout))))\n",
-    "\n",
-    "    # Make each plot, in the correct location\n",
-    "    for (i in 1:numPlots) {\n",
-    "      # Get the i,j matrix positions of the regions that contain this subplot\n",
-    "      matchidx <- as.data.frame(which(layout == i, arr.ind = TRUE))\n",
-    "\n",
-    "      print(plots[[i]], vp = viewport(layout.pos.row = matchidx$row,\n",
-    "                                      layout.pos.col = matchidx$col))\n",
-    "    }\n",
-    "  }\n",
-    "}"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 27,
+   "execution_count": null,
    "metadata": {
     "init_cell": true
    },
    "outputs": [],
    "source": [
-    "# From https://sejohnston.com/2012/08/09/a-quick-and-easy-function-to-plot-lm-results-in-r/\n",
-    "ggplotRegression <- function (fit) {\n",
-    "\n",
-    "require(ggplot2)\n",
-    "\n",
-    "ggplot(fit$model, aes_string(x = names(fit$model)[2], y = names(fit$model)[1])) + \n",
-    "    geom_point() +\n",
-    "    stat_smooth(method = \"lm\", col = \"red\") +\n",
-    "    labs(title = paste(\"Adj R2 = \",signif(summary(fit)$adj.r.squared, 5),\n",
-    "                     \"Intercept =\",signif(fit$coef[[1]],5 ),\n",
-    "                     \" Slope =\",signif(fit$coef[[2]], 5),\n",
-    "                     \" P =\",signif(summary(fit)$coef[2,4], 5))) + \n",
-    "    theme(plot.title = element_text(size=12))\n",
-    "}"
+    "source('plot_extensions.R')"
    ]
   },
   {
   },
   {
    "cell_type": "code",
-   "execution_count": 28,
+   "execution_count": 4,
    "metadata": {
     "scrolled": true
    },
   },
   {
    "cell_type": "code",
-   "execution_count": 29,
+   "execution_count": 5,
    "metadata": {
     "scrolled": false
    },
   },
   {
    "cell_type": "code",
-   "execution_count": 30,
+   "execution_count": 6,
    "metadata": {},
    "outputs": [
     {
   },
   {
    "cell_type": "code",
-   "execution_count": 31,
+   "execution_count": 7,
    "metadata": {},
-   "outputs": [
-    {
-     "data": {},
-     "metadata": {},
-     "output_type": "display_data"
-    },
-    {
-     "data": {
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trYmMJCin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\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UPdr9/NVatKly0L2bUrLDtbXFNz5wLL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\ngwYNIoRcv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-      "text/plain": [
-       "plot without title"
-      ]
-     },
-     "metadata": {},
-     "output_type": "display_data"
-    }
-   ],
+   "outputs": [],
    "source": [
-    "ggplot(rubber, aes(x=hardness, y=loss)) + \n",
-    "    geom_point() +\n",
-    "    stat_smooth(method = \"lm\", col = \"red\")"
+    "ggplot(rubber, aes(x=hardness, y=loss)) + \n",
+    "    geom_point() +\n",
+    "    stat_smooth(method = \"lm\", col = \"red\")"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 32,
+   "execution_count": 8,
    "metadata": {},
    "outputs": [
     {
   },
   {
    "cell_type": "code",
-   "execution_count": 33,
+   "execution_count": 9,
    "metadata": {},
    "outputs": [],
    "source": [
     "# Your solution here"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": 10,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "\n",
+       "Call:\n",
+       "lm(formula = loss ~ strength, data = rubber)\n",
+       "\n",
+       "Residuals:\n",
+       "     Min       1Q   Median       3Q      Max \n",
+       "-155.640  -59.919    2.795   61.221  183.285 \n",
+       "\n",
+       "Coefficients:\n",
+       "            Estimate Std. Error t value Pr(>|t|)    \n",
+       "(Intercept) 305.2248    79.9962   3.815 0.000688 ***\n",
+       "strength     -0.7192     0.4347  -1.654 0.109232    \n",
+       "---\n",
+       "Signif. codes:  0 â€˜***’ 0.001 â€˜**’ 0.01 â€˜*’ 0.05 â€˜.’ 0.1 â€˜ â€™ 1\n",
+       "\n",
+       "Residual standard error: 85.56 on 28 degrees of freedom\n",
+       "Multiple R-squared:  0.08904,\tAdjusted R-squared:  0.0565 \n",
+       "F-statistic: 2.737 on 1 and 28 DF,  p-value: 0.1092\n"
+      ]
+     },
+     "metadata": {},
+     "output_type": "display_data"
+    },
+    {
+     "data": {
+      "text/html": [
+       "<table>\n",
+       "<thead><tr><th></th><th scope=col>Df</th><th scope=col>Sum Sq</th><th scope=col>Mean Sq</th><th scope=col>F value</th><th scope=col>Pr(&gt;F)</th></tr></thead>\n",
+       "<tbody>\n",
+       "\t<tr><th scope=row>strength</th><td> 1       </td><td> 20034.77</td><td>20034.772</td><td>2.736769 </td><td>0.1092317</td></tr>\n",
+       "\t<tr><th scope=row>Residuals</th><td>28       </td><td>204976.59</td><td> 7320.593</td><td>      NA </td><td>       NA</td></tr>\n",
+       "</tbody>\n",
+       "</table>\n"
+      ],
+      "text/latex": [
+       "\\begin{tabular}{r|lllll}\n",
+       "  & Df & Sum Sq & Mean Sq & F value & Pr(>F)\\\\\n",
+       "\\hline\n",
+       "\tstrength &  1        &  20034.77 & 20034.772 & 2.736769  & 0.1092317\\\\\n",
+       "\tResiduals & 28        & 204976.59 &  7320.593 &       NA  &        NA\\\\\n",
+       "\\end{tabular}\n"
+      ],
+      "text/markdown": [
+       "\n",
+       "| <!--/--> | Df | Sum Sq | Mean Sq | F value | Pr(>F) | \n",
+       "|---|---|\n",
+       "| strength |  1        |  20034.77 | 20034.772 | 2.736769  | 0.1092317 | \n",
+       "| Residuals | 28        | 204976.59 |  7320.593 |       NA  |        NA | \n",
+       "\n",
+       "\n"
+      ],
+      "text/plain": [
+       "          Df Sum Sq    Mean Sq   F value  Pr(>F)   \n",
+       "strength   1  20034.77 20034.772 2.736769 0.1092317\n",
+       "Residuals 28 204976.59  7320.593       NA        NA"
+      ]
+     },
+     "metadata": {},
+     "output_type": "display_data"
+    }
+   ],
+   "source": [
+    "fit <- lm(loss ~ strength, data = rubber)\n",
+    "summary(fit)\n",
+    "anova(fit)"
+   ]
+  },
   {
    "cell_type": "markdown",
    "metadata": {},
   },
   {
    "cell_type": "code",
-   "execution_count": 34,
+   "execution_count": 11,
    "metadata": {
     "solution2": "hidden"
    },
   },
   {
    "cell_type": "code",
-   "execution_count": 35,
+   "execution_count": 12,
    "metadata": {},
    "outputs": [
     {
   },
   {
    "cell_type": "code",
-   "execution_count": 36,
+   "execution_count": 13,
    "metadata": {},
    "outputs": [
     {
   },
   {
    "cell_type": "code",
-   "execution_count": 37,
+   "execution_count": 14,
    "metadata": {},
    "outputs": [
     {
   },
   {
    "cell_type": "code",
-   "execution_count": 38,
+   "execution_count": 15,
    "metadata": {},
    "outputs": [
     {
   },
   {
    "cell_type": "code",
-   "execution_count": 39,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
   },
   {
    "cell_type": "code",
-   "execution_count": 40,
+   "execution_count": null,
    "metadata": {},
-   "outputs": [
-    {
-     "data": {},
-     "metadata": {},
-     "output_type": "display_data"
-    },
-    {
-     "data": {
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u0qzFQO8+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\nzC8txQAAAABJRU5ErkJggg==",
-      "text/plain": [
-       "plot without title"
-      ]
-     },
-     "metadata": {},
-     "output_type": "display_data"
-    }
-   ],
+   "outputs": [],
    "source": [
     "anaerobic <- read.csv('anaerob.csv')\n",
     "ggplot(anaerobic, aes(x=oxygen, y=ventil)) + geom_point()"
     "\n",
     "a. Using GenStat, perform the regression of expired ventilation (`ventil`) on oxygen uptake (`oxygen`). Are you at all surprised by how good this regression model seems?\n",
     "\n",
-    "b. Now form a new variable `oxy2`, say, by squaring oxygen. (Create a new column in the `anearobic` dataframe which is `anaerobic$oxygen ^ 2`.) Perform the regression of ventil on `oxygen` and `oxy2`. Comment on the fit of this model according to the printed output (and with recourse to Figure 3.2 in Example 3.1).\n",
+    "b. Now form a new variable `oxy2`, say, by squaring oxygen. (Create a new column in the `anearobic` dataframe which is `anaerobic$oxygen ^ 2`.) Perform the regression of `ventil` on `oxygen` and `oxy2`. Comment on the fit of this model according to the printed output (and with recourse to Figure 3.2 in Example 3.1).\n",
     "\n",
     "c. Make the usual residual plots and comment on the fit of the model again.\n",
     "\n",
   },
   {
    "cell_type": "code",
-   "execution_count": 41,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
index 4c7507abcabe361a0a4de9dc6951fdad9355f2d8..1ef5c8ed7b6f0fe166321e15c9debcbac63adbd7 100644 (file)
@@ -18,7 +18,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 4,
+   "execution_count": null,
    "metadata": {
     "hidden": true,
     "init_cell": true
   },
   {
    "cell_type": "code",
-   "execution_count": 5,
+   "execution_count": null,
    "metadata": {
-    "hidden": true,
     "init_cell": true
    },
    "outputs": [],
    "source": [
-    "# Multiple plot function\n",
-    "#\n",
-    "# ggplot objects can be passed in ..., or to plotlist (as a list of ggplot objects)\n",
-    "# - cols:   Number of columns in layout\n",
-    "# - layout: A matrix specifying the layout. If present, 'cols' is ignored.\n",
-    "#\n",
-    "# If the layout is something like matrix(c(1,2,3,3), nrow=2, byrow=TRUE),\n",
-    "# then plot 1 will go in the upper left, 2 will go in the upper right, and\n",
-    "# 3 will go all the way across the bottom.\n",
-    "#\n",
-    "multiplot <- function(..., plotlist=NULL, file, cols=1, layout=NULL) {\n",
-    "  library(grid)\n",
-    "\n",
-    "  # Make a list from the ... arguments and plotlist\n",
-    "  plots <- c(list(...), plotlist)\n",
-    "\n",
-    "  numPlots = length(plots)\n",
-    "\n",
-    "  # If layout is NULL, then use 'cols' to determine layout\n",
-    "  if (is.null(layout)) {\n",
-    "    # Make the panel\n",
-    "    # ncol: Number of columns of plots\n",
-    "    # nrow: Number of rows needed, calculated from # of cols\n",
-    "    layout <- matrix(seq(1, cols * ceiling(numPlots/cols)),\n",
-    "                    ncol = cols, nrow = ceiling(numPlots/cols))\n",
-    "  }\n",
-    "\n",
-    " if (numPlots==1) {\n",
-    "    print(plots[[1]])\n",
-    "\n",
-    "  } else {\n",
-    "    # Set up the page\n",
-    "    grid.newpage()\n",
-    "    pushViewport(viewport(layout = grid.layout(nrow(layout), ncol(layout))))\n",
-    "\n",
-    "    # Make each plot, in the correct location\n",
-    "    for (i in 1:numPlots) {\n",
-    "      # Get the i,j matrix positions of the regions that contain this subplot\n",
-    "      matchidx <- as.data.frame(which(layout == i, arr.ind = TRUE))\n",
-    "\n",
-    "      print(plots[[i]], vp = viewport(layout.pos.row = matchidx$row,\n",
-    "                                      layout.pos.col = matchidx$col))\n",
-    "    }\n",
-    "  }\n",
-    "}"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 6,
-   "metadata": {
-    "hidden": true,
-    "init_cell": true
-   },
-   "outputs": [],
-   "source": [
-    "# From https://sejohnston.com/2012/08/09/a-quick-and-easy-function-to-plot-lm-results-in-r/\n",
-    "ggplotRegression <- function (fit) {\n",
-    "\n",
-    "require(ggplot2)\n",
-    "\n",
-    "ggplot(fit$model, aes_string(x = names(fit$model)[2], y = names(fit$model)[1])) + \n",
-    "    geom_point() +\n",
-    "    stat_smooth(method = \"lm\", col = \"red\") +\n",
-    "    labs(title = paste(\"Adj R2 = \",signif(summary(fit)$adj.r.squared, 5),\n",
-    "                     \"Intercept =\",signif(fit$coef[[1]],5 ),\n",
-    "                     \" Slope =\",signif(fit$coef[[2]], 5),\n",
-    "                     \" P =\",signif(summary(fit)$coef[2,4], 5))) + \n",
-    "    theme(plot.title = element_text(size=12))\n",
-    "}"
+    "source('plot_extensions.R')"
    ]
   },
   {
   },
   {
    "cell_type": "code",
-   "execution_count": 7,
+   "execution_count": 4,
    "metadata": {},
    "outputs": [
     {
   },
   {
    "cell_type": "code",
-   "execution_count": 8,
+   "execution_count": 5,
    "metadata": {},
    "outputs": [
     {
     "multiplot(taheat, tsheat, cols=2)"
    ]
   },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Blah, blah, comment, blah."
+   ]
+  },
   {
    "cell_type": "markdown",
    "metadata": {},
   },
   {
    "cell_type": "code",
-   "execution_count": 9,
+   "execution_count": 11,
    "metadata": {},
    "outputs": [
     {
     }
    ],
    "source": [
-    "fit <- lm(heat ~ TA, data = cemheat)\n",
-    "summary(fit)\n",
-    "anova(fit)"
+    "fit.ta <- lm(heat ~ TA, data = cemheat)\n",
+    "summary(fit.ta)\n",
+    "anova(fit.ta)"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 10,
+   "execution_count": 12,
    "metadata": {},
    "outputs": [
     {
     }
    ],
    "source": [
-    "ggplotRegression(fit)"
+    "ggplotRegression(fit.ta)"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 11,
+   "execution_count": 13,
    "metadata": {},
    "outputs": [
     {
     }
    ],
    "source": [
-    "fit <- lm(heat ~ TS, data = cemheat)\n",
-    "summary(fit)\n",
-    "anova(fit)"
+    "fit.ts <- lm(heat ~ TS, data = cemheat)\n",
+    "summary(fit.ts)\n",
+    "anova(fit.ts)"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 12,
+   "execution_count": 14,
    "metadata": {},
    "outputs": [
     {
     }
    ],
    "source": [
-    "ggplotRegression(fit)"
+    "ggplotRegression(fit.ts)"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 13,
+   "execution_count": 15,
    "metadata": {},
    "outputs": [
     {
     }
    ],
    "source": [
-    "fit <- lm(heat ~ TA + TS, data = cemheat)\n",
-    "summary(fit)\n",
-    "anova(fit)"
+    "fit.tats <- lm(heat ~ TA + TS, data = cemheat)\n",
+    "summary(fit.tats)\n",
+    "anova(fit.tats)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Now combine the results into one dataframe for easy comparison."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 112,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/html": [
+       "<table>\n",
+       "<thead><tr><th scope=col>Vars</th><th scope=col>Adj.R.2</th></tr></thead>\n",
+       "<tbody>\n",
+       "\t<tr><td>TA       </td><td>0.4915797</td></tr>\n",
+       "\t<tr><td>TS       </td><td>0.6359290</td></tr>\n",
+       "\t<tr><td>TA, TS   </td><td>0.9744140</td></tr>\n",
+       "</tbody>\n",
+       "</table>\n"
+      ],
+      "text/latex": [
+       "\\begin{tabular}{r|ll}\n",
+       " Vars & Adj.R.2\\\\\n",
+       "\\hline\n",
+       "\t TA        & 0.4915797\\\\\n",
+       "\t TS        & 0.6359290\\\\\n",
+       "\t TA, TS    & 0.9744140\\\\\n",
+       "\\end{tabular}\n"
+      ],
+      "text/markdown": [
+       "\n",
+       "Vars | Adj.R.2 | \n",
+       "|---|---|---|\n",
+       "| TA        | 0.4915797 | \n",
+       "| TS        | 0.6359290 | \n",
+       "| TA, TS    | 0.9744140 | \n",
+       "\n",
+       "\n"
+      ],
+      "text/plain": [
+       "  Vars   Adj.R.2  \n",
+       "1 TA     0.4915797\n",
+       "2 TS     0.6359290\n",
+       "3 TA, TS 0.9744140"
+      ]
+     },
+     "metadata": {},
+     "output_type": "display_data"
+    }
+   ],
+   "source": [
+    "fits <- list(fit.ta, fit.ts, fit.tats)\n",
+    "data.frame(\n",
+    "    \"Vars\" = sapply(fits, function(x) toString(attr(summary(x)$terms, \"variables\")[-(1:2)]) ),\n",
+    "    \"Adj R^2\" = sapply(fits, function(x) summary(x)$adj.r.squared)\n",
+    ")"
    ]
   },
   {
   },
   {
    "cell_type": "code",
-   "execution_count": 14,
+   "execution_count": 113,
    "metadata": {},
    "outputs": [
     {
     }
    ],
    "source": [
-    "predict(fit, data.frame(\"TA\" = 15, \"TS\" = 55))"
+    "predict(fit.tats, data.frame(\"TA\" = 15, \"TS\" = 55))"
    ]
   },
   {
   },
   {
    "cell_type": "code",
-   "execution_count": 15,
+   "execution_count": 114,
    "metadata": {},
    "outputs": [
     {
     }
    ],
    "source": [
-    "autoplot(fit)"
+    "autoplot(fit.tats)"
    ]
   },
   {
   },
   {
    "cell_type": "code",
-   "execution_count": 16,
+   "execution_count": 35,
    "metadata": {},
    "outputs": [
     {
   },
   {
    "cell_type": "code",
-   "execution_count": 17,
+   "execution_count": 36,
    "metadata": {},
    "outputs": [
     {
   },
   {
    "cell_type": "code",
-   "execution_count": 18,
+   "execution_count": 37,
    "metadata": {},
    "outputs": [
     {
   },
   {
    "cell_type": "code",
-   "execution_count": 19,
+   "execution_count": 38,
    "metadata": {},
    "outputs": [
     {
    "metadata": {},
    "source": [
     "### Now form a new variable `oxy2`, say, by squaring oxygen.\n",
-    "(Create a new column in the `anearobic` dataframe which is `anaerobic$oxygen ^ 2`.) Perform the regression of ventil on `oxygen` and `oxy2`. Comment on the fit of this model according to the printed output (and with recourse to Figure 3.2 in Example 3.1)."
+    "(Create a new column in the `anearobic` dataframe which is `anaerobic$oxygen ^ 2`.) Perform the regression of `ventil` on `oxygen` and `oxy2`. Comment on the fit of this model according to the printed output (and with recourse to Figure 3.2 in Example 3.1)."
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 20,
+   "execution_count": 39,
    "metadata": {},
    "outputs": [
     {
   },
   {
    "cell_type": "code",
-   "execution_count": 21,
+   "execution_count": 40,
    "metadata": {},
    "outputs": [
     {
   },
   {
    "cell_type": "code",
-   "execution_count": 22,
+   "execution_count": 41,
    "metadata": {},
    "outputs": [
     {
   },
   {
    "cell_type": "code",
-   "execution_count": 23,
+   "execution_count": 42,
    "metadata": {},
    "outputs": [
     {